Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0748
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 202 2e-52
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 4e-52
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 201 4e-52
SB_56| Best HMM Match : Actin (HMM E-Value=0) 201 4e-52
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 201 4e-52
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 1e-23
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 106 2e-23
SB_54| Best HMM Match : Actin (HMM E-Value=0) 96 2e-20
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 76 3e-14
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 63 2e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 55 5e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 6e-07
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 45 5e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 36 0.025
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 32 0.31
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 32 0.40
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 32 0.40
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 32 0.40
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.40
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.53
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.53
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 31 0.53
SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 30 1.6
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.6
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 30 1.6
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 30 1.6
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 30 1.6
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 30 1.6
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 29 2.2
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 29 2.2
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 29 2.2
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13) 29 3.8
SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058) 29 3.8
SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18) 28 5.0
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 5.0
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.0
SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42) 28 6.6
SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05) 27 8.7
SB_23472| Best HMM Match : HIT (HMM E-Value=0.43) 27 8.7
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028) 27 8.7
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015) 27 8.7
SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32) 27 8.7
SB_12041| Best HMM Match : PHD (HMM E-Value=0.001) 27 8.7
SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.7
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 202 bits (493), Expect = 2e-52
Identities = 95/119 (79%), Positives = 99/119 (83%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
APLNPKANREKMTQIMFETFN+PAMYVA L++ S DGVSHTVPIY
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIY 167
Score = 108 bits (259), Expect = 4e-24
Identities = 47/52 (90%), Positives = 51/52 (98%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 201 bits (490), Expect = 4e-52
Identities = 94/119 (78%), Positives = 99/119 (83%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
APLNPKANREKMTQIMFETFN+PAMYVA L++ S DGV+HTVPIY
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIY 167
Score = 108 bits (259), Expect = 4e-24
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 201 bits (490), Expect = 4e-52
Identities = 94/119 (78%), Positives = 99/119 (83%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
APLNPKANREKMTQIMFETFN+PAMYVA L++ S DGV+HTVPIY
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIY 166
Score = 105 bits (252), Expect = 3e-23
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 201 bits (490), Expect = 4e-52
Identities = 94/119 (78%), Positives = 99/119 (83%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
APLNPKANREKMTQIMFETFN+PAMYVA L++ S DGV+HTVPIY
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIY 166
Score = 106 bits (255), Expect = 1e-23
Identities = 48/50 (96%), Positives = 50/50 (100%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 201 bits (490), Expect = 4e-52
Identities = 94/119 (78%), Positives = 99/119 (83%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 420
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 421 APLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
APLNPKANREKMTQIMFETFN+PAMYVA L++ S DGV+HTVPIY
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIY 167
Score = 112 bits (270), Expect = 2e-25
Identities = 50/52 (96%), Positives = 52/52 (100%)
Frame = +2
Query: 98 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 52
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 106 bits (255), Expect = 1e-23
Identities = 47/50 (94%), Positives = 50/50 (100%)
Frame = +2
Query: 104 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 253
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 51
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/43 (83%), Positives = 37/43 (86%)
Frame = +1
Query: 241 GTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 369
G + YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/52 (50%), Positives = 32/52 (61%)
Frame = +1
Query: 442 NREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
N + M +IMFETFN+PAMYVA L++ S DGV+HTVPIY
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIY 129
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 106 bits (254), Expect = 2e-23
Identities = 51/127 (40%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Frame = +1
Query: 220 SGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 396
S + G + L VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 397 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGV 576
VLLTE PLNP NREKM ++MFE + +Y+A L + + S DGV
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQAVLTLYAQGLLTGVVIDSGDGV 163
Query: 577 SHTVPIY 597
+H P+Y
Sbjct: 164 THICPVY 170
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 116 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 214
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 96.3 bits (229), Expect = 2e-20
Identities = 45/83 (54%), Positives = 56/83 (67%)
Frame = +1
Query: 349 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASSRALAVR 528
K+W H F ++LRV E+ PVLLTEAPLNPK NRE+M Q+MFE+FN P MYVA +A+
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQAVMALY 2188
Query: 529 VRSYHRYRAWTSRDGVSHTVPIY 597
+ DGVSHTVP+Y
Sbjct: 2189 ASGRTTGTVFDCGDGVSHTVPVY 2211
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 122 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 223
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 75.8 bits (178), Expect = 3e-14
Identities = 33/67 (49%), Positives = 45/67 (67%)
Frame = +1
Query: 397 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGV 576
+HPVLLTEAPLNP+ NREK ++ FETFN PA++++ L++ + DGV
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDAGDGV 185
Query: 577 SHTVPIY 597
SH+VPIY
Sbjct: 186 SHSVPIY 192
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/71 (35%), Positives = 44/71 (61%)
Frame = +1
Query: 307 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNT 486
PI+ G++ +WD EKI + + ++ HP+L++EA N + REK+T++MFE +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 487 PAMYVASSRAL 519
PA ++ + L
Sbjct: 63 PAFFLCKNSVL 73
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 107 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 223
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 54.8 bits (126), Expect = 5e-08
Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 223 GRDGRYGTEGL--YVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 396
GR + G E L ++GDEA K T K+PI H IV +WD ME+ W + LR PE
Sbjct: 273 GRSAK-GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPE 330
Query: 397 EHPVLL 414
+H LL
Sbjct: 331 DHYFLL 336
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 92 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 238
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 44.8 bits (101), Expect = 5e-05
Identities = 22/45 (48%), Positives = 27/45 (60%)
Frame = +1
Query: 463 IMFETFNTPAMYVASSRALAVRVRSYHRYRAWTSRDGVSHTVPIY 597
IMFE FN+PA+YVA L++ + S DGVSH VPIY
Sbjct: 1 IMFEAFNSPAVYVAIQAVLSLYASGRTTGVVFDSGDGVSHNVPIY 45
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -1
Query: 220 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 104
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 223 GRDGRYGTEGLYVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 393
GR G + GL VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 394 EEHPVLLTEAPLNPKANRE 450
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 35.9 bits (79), Expect = 0.025
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 253 LYVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 378
L++GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 272 LFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 110 EVAALVVDNGSGMCKAGFAGDDAPRAV 190
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 32.3 bits (70), Expect = 0.31
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 31.9 bits (69), Expect = 0.40
Identities = 19/48 (39%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 195 GNTARGASSPAKPALHIPEPLSTT 124
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 195 GNTARGASSPAKPALHIPEPLSTT 124
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 31.5 bits (68), Expect = 0.53
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_49798| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1137
Score = 31.1 bits (67), Expect = 0.71
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = +1
Query: 415 TEAPLNPKANREKMTQIMFETFNTPAMYVASSRA 516
T +P +P N +K T FET NTP + +A+ RA
Sbjct: 444 TASPRHPTNNTDKATH-KFETRNTPTLSIATERA 476
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.7 bits (66), Expect = 0.93
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = -2
Query: 279 ALCLISYIKSFCPIPTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTT 124
+L L + I+ + + P W GNT R PAKP+L++P P S T
Sbjct: 512 SLPLDAKIRHYNRLSNQYPKWLQQVKDGGNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 29.9 bits (64), Expect = 1.6
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
L C ++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 116
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 115 NFFVAHLELVK 83
V L+ K
Sbjct: 152 QVDVLLLDFQK 162
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 116
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 115 NFFVAHLELVK 83
V L+ K
Sbjct: 152 QVDVLLLDFQK 162
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 116
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 126 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 184
Query: 115 NFFVAHLELVK 83
V L+ K
Sbjct: 185 QVDVLLLDFQK 195
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 116
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 43 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 101
Query: 115 NFFVAHLELVK 83
V L+ K
Sbjct: 102 QVDVLLLDFQK 112
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 29.5 bits (63), Expect = 2.2
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 152
H++ K ++SH +HH ++ + +HG R + SCE+ L
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQL 503
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 116
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 715 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 773
Query: 115 NFFVAHLELVK 83
V L+ K
Sbjct: 774 QVDVLLLDFQK 784
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 29.5 bits (63), Expect = 2.2
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 286 LFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 116
L C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 799 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 857
Query: 115 NFFVAHLELVK 83
V L+ K
Sbjct: 858 QVDVLLLDFQK 868
>SB_21165| Best HMM Match : LRR_1 (HMM E-Value=6.5e-13)
Length = 1383
Score = 28.7 bits (61), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +2
Query: 530 SGRTTGIVLGLPATVSPTPCP 592
SG+ G ++G PAT SP+P P
Sbjct: 1156 SGKVPGTLIGKPATCSPSPPP 1176
>SB_9603| Best HMM Match : Extensin_2 (HMM E-Value=0.0058)
Length = 339
Score = 28.7 bits (61), Expect = 3.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +3
Query: 429 QPQGQQREDDPDHVRNIQHARHVRRIQPCSRCTRPVVPPVSCLDFP 566
QP P HVR++ + HVR + S C P+ P +S P
Sbjct: 128 QPPVMSSTSQPSHVRHLSTSSHVRHLLTQS-CPPPLNPVMSATSQP 172
>SB_43004| Best HMM Match : FAD_binding_4 (HMM E-Value=1.4e-18)
Length = 1067
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/40 (35%), Positives = 17/40 (42%)
Frame = +3
Query: 426 PQPQGQQREDDPDHVRNIQHARHVRRIQPCSRCTRPVVPP 545
PQPQGQ D + N Q ++ C P VPP
Sbjct: 607 PQPQGQLNHSIRDMLINCQSPSIIQSFFQVPLCVSPEVPP 646
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.3 bits (60), Expect = 5.0
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Frame = -1
Query: 280 CSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNF 110
C ++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 465 CLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQV 523
Query: 109 FVAHLELVK 83
V L+ K
Sbjct: 524 DVLLLDFQK 532
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 195 GNTARGASSPAKPALHIPEPLSTT 124
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 195 GNTARGASSPAKPALHIPEPLSTT 124
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_45709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = +3
Query: 507 QPCSRCTRPVVPPVSCLDFPRRC 575
Q C TRP PPV C R C
Sbjct: 455 QNCQNVTRPTPPPVKCRKNERMC 477
>SB_29861| Best HMM Match : RRM_1 (HMM E-Value=1.10002e-42)
Length = 1531
Score = 27.9 bits (59), Expect = 6.6
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +2
Query: 479 STRPPCTSHPAVLSLYASGRTTGIVLGLPATVSPTPCPST 598
+TRPPC+ P V +LY R P V P+ PST
Sbjct: 1326 NTRPPCSCLPFVFTLYPRTRVP------PVRVYPSCLPST 1359
>SB_59800| Best HMM Match : SPRY (HMM E-Value=7.8e-05)
Length = 1444
Score = 27.5 bits (58), Expect = 8.7
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 394 EEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVASSRALAVRV 531
E++PV + PL + I+F+ T +Y SS AL R+
Sbjct: 344 EDNPVTFLQFPLATPPDPPSTRNILFQGIETIPLYSQSSSALQTRM 389
>SB_23472| Best HMM Match : HIT (HMM E-Value=0.43)
Length = 168
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 44 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 80
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -2
Query: 210 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 100
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_18966| Best HMM Match : RVT_1 (HMM E-Value=0.028)
Length = 252
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 89 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 125
>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
Length = 277
Score = 27.5 bits (58), Expect = 8.7
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +3
Query: 507 QPCSRCTRPVVPP 545
+PCS CT+P +PP
Sbjct: 222 EPCSLCTKPALPP 234
>SB_25064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 673 HIIFHDIMNHIDTHNILV-----KFQHGFRRFFSCETQLITT 709
>SB_19427| Best HMM Match : RVT_1 (HMM E-Value=7.5e-32)
Length = 698
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 292 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 328
>SB_12041| Best HMM Match : PHD (HMM E-Value=0.001)
Length = 560
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 503 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 539
>SB_12008| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 979
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -1
Query: 268 HLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 143
H++ +++H D H ++ + +HG R SCET L T
Sbjct: 129 HIIFHDIMNHLDTHNILV-----KFQHGFRRFFSCETQLITT 165
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,544,214
Number of Sequences: 59808
Number of extensions: 515747
Number of successful extensions: 1643
Number of sequences better than 10.0: 61
Number of HSP's better than 10.0 without gapping: 1429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1617
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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