Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0748
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.56 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   6.9  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    21   6.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.2  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             21   9.2  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   9.2  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   9.2  

>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -1

Query: 298 GSGYLFCSVPHLLHKVLLSHTDHHALMAGPSHDRGEHGARSIISC 164
           GS Y+   VP    +VLL+ TD   +    S D  E+G     +C
Sbjct: 329 GSNYMQTRVPAWCDRVLLNPTDKMLVQDISSPDAVEYGIIGPTTC 373


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 379  LRVAPEEHPVLLTEAPLNPKANREKM 456
            LR+ P  H V+ T   +NP  + EK+
Sbjct: 1461 LRLGPCWHAVMTTYPRINPDNHNEKL 1486


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 8/25 (32%), Positives = 10/25 (40%)
 Frame = +3

Query: 513 CSRCTRPVVPPVSCLDFPRRCLPHR 587
           C++C         C      CLPHR
Sbjct: 87  CNKCIGCSAEKFECSKTSNPCLPHR 111


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +2

Query: 518 SLYASGRTTGIVLGLPATVSPT 583
           +LY   R  GI L  P   SPT
Sbjct: 497 TLYKIARREGIRLAAPFNASPT 518


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +2

Query: 143 GMCKAGFAGD 172
           GMCK G +GD
Sbjct: 130 GMCKEGISGD 139


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 202 DRGEHGARSIISCETGLA 149
           D GEH   ++   E GLA
Sbjct: 130 DPGEHNGDTVTDVEAGLA 147


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 202 DRGEHGARSIISCETGLA 149
           D GEH   ++   E GLA
Sbjct: 125 DPGEHNGDTVTDVEAGLA 142


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 208 KAPPSGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDD 342
           K  P G  G  G + +    E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 12/45 (26%), Positives = 20/45 (44%)
 Frame = +1

Query: 208 KAPPSGRDGRYGTEGLYVGDEAQSKRGILTLKYPIEHGIVTNWDD 342
           K  P G  G  G + +    E   KRG++  +  ++    T +DD
Sbjct: 180 KRAPMGFYGTRGKKIILDALEELDKRGVMDFQIGLQRKKDTTFDD 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,703
Number of Sequences: 438
Number of extensions: 4400
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)