Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0746
         (619 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   3.8  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    25   6.6  
SPAC23C11.17 |||mitochondrial inner membrane protein involved in...    25   6.6  

>SPAC9E9.01 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 99

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 504 RLQHIPLSPAGVIAKRPAPIALPNSCAALNGEW 602
           RL+    S  G + K  A  A+ + C A NGEW
Sbjct: 33  RLKTFSDSNVGSVIKLEAGFAVWSRCEAANGEW 65


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -2

Query: 432 THYRANWVPGP-PSSRERWR 376
           T+Y +NW P P  + R RW+
Sbjct: 491 TYYMSNWEPPPKETDRNRWK 510


>SPAC23C11.17 |||mitochondrial inner membrane protein involved in
           potassium ion transport|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 509 AAHPPFASWRNSEEARTDRPSQQLRSPEWRMGK 607
           A HP  A  +  E   T +P+   +SPE  + K
Sbjct: 449 AEHPDLAKKQTEENKATSKPAVSAKSPESNIPK 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,720
Number of Sequences: 5004
Number of extensions: 47050
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)