Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0746
         (619 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203...    29   3.0  
06_01_0092 - 775290-775691                                             27   9.0  
02_05_0811 + 31939414-31939660,31939766-31940181                       27   9.0  

>07_01_0276 +
           2028983-2029070,2030084-2030151,2030317-2031246,
           2031334-2031415,2031544-2031609,2032606-2033304,
           2033422-2035424,2035599-2036173,2037060-2037223,
           2037306-2037365,2037475-2037839
          Length = 1699

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -2

Query: 426 YRANWVPGPPSSRERWRDIVRRIKSAP 346
           +RA+ + G    RERWRD  R   SAP
Sbjct: 83  FRASVLDGETGCRERWRDDEREPNSAP 109


>06_01_0092 - 775290-775691
          Length = 133

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = -2

Query: 555 RASSLLRQLAKGGCAA 508
           RA+SLLRQL + GCAA
Sbjct: 22  RAASLLRQLIEDGCAA 37


>02_05_0811 + 31939414-31939660,31939766-31940181
          Length = 220

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = -1

Query: 595 PFRAAQLLGRAIGAGLFAITPAGERGMCCRRLSW 494
           PF A Q LGR +       TPAG  G    R  W
Sbjct: 88  PFSAPQSLGRLLSLMDDLATPAGRAGAATLRRGW 121


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,502,743
Number of Sequences: 37544
Number of extensions: 343037
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)