Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0746
         (619 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase ...    29   2.0  
U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase ...    29   2.0  
U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase ...    29   2.0  
U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase ...    29   2.0  
U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase ...    29   2.0  
L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical pr...    29   2.7  
L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical pr...    29   2.7  

>U82936-1|AAB40869.1|  682|Caenorhabditis elegans protein kinase C2
           B isoform protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 167 LIHEEKLLKFCDPN*RHRCARNLNLMC 87
           ++H+    + CD N  HRC +N+  MC
Sbjct: 127 ILHQGMKCQSCDTNVHHRCVKNVPNMC 153


>U82935-1|AAB40868.1|  680|Caenorhabditis elegans protein kinase C2
           A isoform protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 167 LIHEEKLLKFCDPN*RHRCARNLNLMC 87
           ++H+    + CD N  HRC +N+  MC
Sbjct: 127 ILHQGMKCQSCDTNVHHRCVKNVPNMC 153


>U29376-5|AAA68709.2|  936|Caenorhabditis elegans Protein kinase c
           protein 2, isoformc protein.
          Length = 936

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 167 LIHEEKLLKFCDPN*RHRCARNLNLMC 87
           ++H+    + CD N  HRC +N+  MC
Sbjct: 267 ILHQGMKCQSCDTNVHHRCVKNVPNMC 293


>U29376-4|AAM51504.1|  682|Caenorhabditis elegans Protein kinase c
           protein 2, isoformb protein.
          Length = 682

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 167 LIHEEKLLKFCDPN*RHRCARNLNLMC 87
           ++H+    + CD N  HRC +N+  MC
Sbjct: 127 ILHQGMKCQSCDTNVHHRCVKNVPNMC 153


>U29376-3|AAM51503.1|  680|Caenorhabditis elegans Protein kinase c
           protein 2, isoforma protein.
          Length = 680

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 167 LIHEEKLLKFCDPN*RHRCARNLNLMC 87
           ++H+    + CD N  HRC +N+  MC
Sbjct: 127 ILHQGMKCQSCDTNVHHRCVKNVPNMC 153


>L13200-2|ABE73330.1|  810|Caenorhabditis elegans Hypothetical
           protein ZK1236.3b protein.
          Length = 810

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 477 ENPGVTQLNRLQHIPLSPAGVIAKRPAPIALP 572
           E  G ++L R  + P++PA V+ K   P+ALP
Sbjct: 226 EPAGPSELMRAINAPVAPAPVVIKIETPVALP 257


>L13200-1|AAA28193.1| 1000|Caenorhabditis elegans Hypothetical
           protein ZK1236.3a protein.
          Length = 1000

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +3

Query: 477 ENPGVTQLNRLQHIPLSPAGVIAKRPAPIALP 572
           E  G ++L R  + P++PA V+ K   P+ALP
Sbjct: 416 EPAGPSELMRAINAPVAPAPVVIKIETPVALP 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,827,547
Number of Sequences: 27780
Number of extensions: 281384
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)