Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0746
         (619 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g27530.1 68416.m03441 vesicle tethering family protein contai...    28   5.7  
At3g03400.1 68416.m00337 calmodulin-related protein, putative si...    27   7.5  
At2g20950.1 68415.m02471 expressed protein                             27   10.0 

>At3g27530.1 68416.m03441 vesicle tethering family protein contains
           Pfam PF04869: Uso1 / p115 like vesicle tethering
           protein, head region and PF04871: Uso1 / p115 like
           vesicle tethering protein, C terminal region
          Length = 914

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = -1

Query: 571 GRAIGAGLFAITPAGERGMCCRRLSWVTPGFSQSRRCKTTASEL*YDSL*GELGTGPPLE 392
           G  +  GL +    G+   CCR  S ++     + RCK  A ++  +S    +GT  PL 
Sbjct: 436 GSMLLRGLCSGEADGDLETCCRAASILSHVVKDNLRCKEKALKIVLESPMPSMGTPEPLF 495

Query: 391 Q 389
           Q
Sbjct: 496 Q 496


>At3g03400.1 68416.m00337 calmodulin-related protein, putative
           similar to calmodulin-related protein 2, touch-induced
           SP:P25070 from [Arabidopsis thaliana]
          Length = 137

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 116 YDVSLDHKISATFLHELMTQI 178
           YD++ D KISA  LH +MT++
Sbjct: 88  YDINCDGKISANELHVVMTRL 108


>At2g20950.1 68415.m02471 expressed protein
          Length = 520

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 408 PGPPSSRERWRDIVRRIKSAPSNTT*RSRP 319
           P P ++ ER RD  R    A  N T R+RP
Sbjct: 155 PAPYNTHERGRDYSRERYEAEGNVTSRNRP 184


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,064
Number of Sequences: 28952
Number of extensions: 252760
Number of successful extensions: 522
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 505
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 522
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)