Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0745
         (428 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.2  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.0  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   6.6  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -1

Query: 296 SDASSLIMTPVPSQIATTVSMVLNQRNPTRSLSVENTS 183
           S+ SSLI TP PS          N  N T +    NTS
Sbjct: 259 SNTSSLITTPSPSASPLAYQHEYNSFNWTANGHGHNTS 296


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.0 bits (42), Expect = 5.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 245 TVSMVLNQRNPTRSLSVENTSL 180
           T  M    R+PT  L+V NTS+
Sbjct: 630 TGKMFQGVRSPTFHLTVRNTSI 651


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 6.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 82  YV*IELKTNYSRQYFVNSRSNMETCA 5
           Y  I + T Y R+ +     N+E+CA
Sbjct: 80  YYVIVVTTFYKRRTWTRLLKNLESCA 105


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,108
Number of Sequences: 336
Number of extensions: 1482
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used:  9460170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)