Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0745
         (428 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    27   1.6  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    25   5.0  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    25   6.6  
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo...    24   8.7  

>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = +2

Query: 113 CSLTSV*WCSRFKRDFCNNNLVLNLYSQRKAIVSDSV 223
           C+LT   +  RF  D+  + L ++ + Q+K  ++DS+
Sbjct: 8   CTLTLKFFIDRFHTDYRLSKLAISFFDQKKNKMADSI 44


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 272 TPVPSQIATTVSMVLNQRNPTRSLSVENTS 183
           T V S    T S VLN   P  S S+ NTS
Sbjct: 376 TAVNSSTPITSSSVLNSSTPITSSSILNTS 405



 Score = 24.2 bits (50), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 275  MTPVPSQIATTVSMVLNQRNPTRSLSVENTS 183
            +T + S    T S VLN   P  S +V NTS
Sbjct: 2571 LTALNSSTPITSSSVLNSSTPITSSTVVNTS 2601


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 227 NQRNPTRSLSVENTSLKRDCCYKNPV*ILNTTIH 126
           +++NPTR +++EN + K       PV ++  +IH
Sbjct: 613 SEKNPTRIVALENGNTKWMDYLPRPVILVTGSIH 646


>SPBC1604.04 |||thiamine pyrophosphate
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 314

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 292 SEKQHRYHNLLNDDHANEMLEGEGAGLAA 378
           S+ +H   NL  +DHA   L G  AG+ A
Sbjct: 90  SKLKHLTENLAMNDHAVNFLCGTSAGIFA 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,492,777
Number of Sequences: 5004
Number of extensions: 26775
Number of successful extensions: 110
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)