Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0745
(428 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1762 - 39716723-39717016,39717256-39717332,39717452-397174... 28 2.8
12_01_0777 - 7095081-7096259,7096636-7096725,7096827-7096902,709... 28 3.7
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 3.7
04_03_0784 - 19610370-19611548,19611830-19611919,19612001-196120... 28 3.7
03_02_0936 - 12528336-12528379,12528516-12528602,12528696-125288... 27 4.9
11_06_0298 - 22072391-22073863 27 6.4
10_08_0904 + 21464762-21467479 27 6.4
05_05_0202 - 23211342-23211385,23211493-23211579,23211666-232117... 27 6.4
04_04_0895 - 29168107-29168229,29168617-29170068 27 8.5
>01_06_1762 -
39716723-39717016,39717256-39717332,39717452-39717498,
39717953-39718053,39718271-39718360,39718556-39720133
Length = 728
Score = 28.3 bits (60), Expect = 2.8
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = +1
Query: 259 DGTGVMMRLDASEKQHRYHNLLNDDHANEMLEGEGAGLAARVAELEGPLAPDRL 420
D G+M+ S + H+ + D ++E G G A A +EG APD L
Sbjct: 132 DDVGMMIEDAMSGQPHQADDCTGDGDTKAVMEAAGGGDDAGDACMEGSDAPDDL 185
>12_01_0777 -
7095081-7096259,7096636-7096725,7096827-7096902,
7097150-7097367,7097502-7097717,7097922-7098107,
7098181-7098303,7098399-7098514,7099254-7099832,
7101485-7101517,7102485-7103679,7103732-7103797,
7104843-7104905,7105328-7105411
Length = 1407
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 274 MMRLDASEKQHRYHNLLNDDHANEMLEGEGAGLAARVAELEG 399
++ L E + HN + +H L EG G+AARV E G
Sbjct: 662 VLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLG 703
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 308 RCCFSDASSLIMTPVPSQIATTVSMVLNQRNP 213
+CC S +++L TPVPS A ++L R P
Sbjct: 28 QCCSSSSTALFPTPVPSLRAYYPRLLLAFRRP 59
>04_03_0784 -
19610370-19611548,19611830-19611919,19612001-19612076,
19612917-19613134,19613333-19613548,19613974-19614159,
19614242-19614364,19614456-19614571,19615126-19615588
Length = 888
Score = 27.9 bits (59), Expect = 3.7
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 274 MMRLDASEKQHRYHNLLNDDHANEMLEGEGAGLAARVAELEG 399
++ L E + HN + +H L EG G+AARV E G
Sbjct: 143 VLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLG 184
>03_02_0936 -
12528336-12528379,12528516-12528602,12528696-12528809,
12528895-12529120,12529200-12529523,12529603-12529773,
12529870-12530100,12530291-12530479,12531176-12531178
Length = 462
Score = 27.5 bits (58), Expect = 4.9
Identities = 11/14 (78%), Positives = 11/14 (78%)
Frame = +2
Query: 68 FYSNVFRITEILCF 109
FY NVFRIT LCF
Sbjct: 430 FYGNVFRITPPLCF 443
>11_06_0298 - 22072391-22073863
Length = 490
Score = 27.1 bits (57), Expect = 6.4
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +1
Query: 247 VAICDGTGVMMRLDASEKQHRYHNLLNDDHANEMLEGEGAGLAARVAELEGPLAPDRLKN 426
V + +G G +R+ S+ + + ++ + E G GA + A+VAEL+ +A D L++
Sbjct: 415 VMLTEGAGAAIRVPESKGKEKIAAVVREMMVGE---GRGAAVRAKVAELQ-KMATDGLRD 470
>10_08_0904 + 21464762-21467479
Length = 905
Score = 27.1 bits (57), Expect = 6.4
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +2
Query: 140 SRFKRDFCNNNLVLNLYSQRKAIV 211
S F D C NN VL+LY + KA++
Sbjct: 422 SGFDVDICVNNAVLDLYGKCKALM 445
>05_05_0202 -
23211342-23211385,23211493-23211579,23211666-23211779,
23211886-23212111,23212222-23212401,23212511-23212654,
23212818-23212979,23213093-23213296,23214109-23214156,
23214601-23214846
Length = 484
Score = 27.1 bits (57), Expect = 6.4
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +2
Query: 68 FYSNVFRITEILCF 109
FY NVFR+T LCF
Sbjct: 452 FYGNVFRVTPPLCF 465
>04_04_0895 - 29168107-29168229,29168617-29170068
Length = 524
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 261 WYRRHDEARRIRKTAPLPQSPQRRP 335
WYRR D T PL +SP ++P
Sbjct: 396 WYRRADYTAYAFNTRPLARSPCQKP 420
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,378,918
Number of Sequences: 37544
Number of extensions: 160530
Number of successful extensions: 363
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 362
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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