Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0745
(428 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04) 27 5.0
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.0
SB_815| Best HMM Match : Ribosomal_60s (HMM E-Value=0.14) 27 5.0
SB_55513| Best HMM Match : Pox_A32 (HMM E-Value=0.056) 27 6.6
SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2) 27 6.6
SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075) 27 6.6
SB_40181| Best HMM Match : Pox_A32 (HMM E-Value=0.0059) 27 6.6
SB_39944| Best HMM Match : Herpes_UL46 (HMM E-Value=0.8) 27 6.6
SB_37329| Best HMM Match : rve (HMM E-Value=8.8e-17) 27 6.6
SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073) 27 6.6
SB_12138| Best HMM Match : Pox_A32 (HMM E-Value=0.054) 27 6.6
SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46) 27 6.6
SB_1075| Best HMM Match : rve (HMM E-Value=0.0089) 27 6.6
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_36928| Best HMM Match : Pox_A32 (HMM E-Value=0.022) 27 6.6
SB_34881| Best HMM Match : DUF1118 (HMM E-Value=2.8) 27 6.6
SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_22557| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 27 6.6
SB_8244| Best HMM Match : TMP_2 (HMM E-Value=2.4) 27 6.6
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.6
SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53) 27 8.7
SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30) 27 8.7
>SB_20177| Best HMM Match : hATC (HMM E-Value=1e-04)
Length = 618
Score = 27.5 bits (58), Expect = 5.0
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Frame = -1
Query: 143 LNTTIHLS----MNTQNTIFQ*CEIRLNRIKNELFTTILC 36
LNTT+H + M Q+T+FQ C N+I ++L ++ C
Sbjct: 120 LNTTMHKNNNEQMKKQSTLFQTCAAESNKI-DKLIPSVAC 158
>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2499
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = -1
Query: 260 SQIATTVSMVLNQRNPTRSLSVENTSLKR 174
S+I V +LN+ R L V++TSLKR
Sbjct: 1434 SEINERVQRILNESGRVRRLRVDSTSLKR 1462
>SB_815| Best HMM Match : Ribosomal_60s (HMM E-Value=0.14)
Length = 443
Score = 27.5 bits (58), Expect = 5.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +1
Query: 298 KQHRYHNLLNDDHANEMLEGEGAGLAA 378
K+ H +++D++ + +LEG AGL A
Sbjct: 282 KKFSNHGMMSDEYFDSLLEGSAAGLPA 308
>SB_55513| Best HMM Match : Pox_A32 (HMM E-Value=0.056)
Length = 937
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 674 HGMMSDEYFESLLEGDAAGLPA 695
>SB_51578| Best HMM Match : Hormone_5 (HMM E-Value=1.2)
Length = 622
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 88 HGMMSDEYFESLLEGDAAGLPA 109
>SB_47639| Best HMM Match : Pox_A32 (HMM E-Value=0.075)
Length = 911
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 357 HGMMSDEYFESLLEGDAAGLPA 378
>SB_40181| Best HMM Match : Pox_A32 (HMM E-Value=0.0059)
Length = 280
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 201 HGMMSDEYFESLLEGDAAGLPA 222
>SB_39944| Best HMM Match : Herpes_UL46 (HMM E-Value=0.8)
Length = 636
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 199 HRMMSDEYFESLLEGDAAGLPA 220
>SB_37329| Best HMM Match : rve (HMM E-Value=8.8e-17)
Length = 420
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +1
Query: 298 KQHRYHNLLNDDHANEMLEGEGAGLAA 378
K+ H +++D++ +L+G+ AGL A
Sbjct: 27 KEFSNHGMMSDEYFESLLDGDAAGLPA 53
>SB_35742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1113
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 596 HGMMSDEYFESLLEGDAAGLPA 617
>SB_13424| Best HMM Match : Pox_A32 (HMM E-Value=0.073)
Length = 1387
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 1308 HGMMSDEYFESLLEGDAAGLPA 1329
>SB_12138| Best HMM Match : Pox_A32 (HMM E-Value=0.054)
Length = 409
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 201 HRMMSDEYFESLLEGDAAGLPA 222
>SB_10611| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1134
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 201 HGMMSDEYFESLLEGDAAGLPA 222
>SB_6357| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1650
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 1040 HGMMSDEYFESLLEGDAAGLPA 1061
>SB_2284| Best HMM Match : Hormone_5 (HMM E-Value=0.46)
Length = 1266
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 545 HGMMSDEYFESLLEGDAAGLPA 566
>SB_1075| Best HMM Match : rve (HMM E-Value=0.0089)
Length = 1617
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 930 HGMMSDEYFESLLEGDAAGLPA 951
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 1755 HGMMSDEYFESLLEGDAAGLPA 1776
>SB_47817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 693
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 310 YHNLLNDDHANEMLEGEGAGL 372
YH +++D++ +LEG AGL
Sbjct: 292 YHGMMSDEYFESLLEGGAAGL 312
>SB_41374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 529 HGMMSDEYFESLLEGDAAGLLA 550
>SB_36928| Best HMM Match : Pox_A32 (HMM E-Value=0.022)
Length = 496
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 201 HGMMSDEYFESLLEGDAAGLPA 222
>SB_34881| Best HMM Match : DUF1118 (HMM E-Value=2.8)
Length = 382
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 287 HGMMSDEYFESLLEGDAAGLLA 308
>SB_23352| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1830
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 586 HGMMSDEYFESLLEGDAAGLPA 607
>SB_22557| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 656
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 194 HGMMSDEYFESLLEGDAAGLPA 215
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 277 MRLDASEKQHRYHNLLNDDHANEMLEGE 360
+RL S+ QH +LL+DD+ N L G+
Sbjct: 805 LRLRRSKNQHLSSSLLDDDNDNAELSGD 832
>SB_8244| Best HMM Match : TMP_2 (HMM E-Value=2.4)
Length = 259
Score = 27.1 bits (57), Expect = 6.6
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H +++D++ +LEG+ AGL A
Sbjct: 149 HGMMSDEYFESLLEGDAAGLPA 170
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 313 HNLLNDDHANEMLEGEGAGLAA 378
H ++ND+ +LEG+ AGL A
Sbjct: 1190 HGMMNDECFESLLEGDAAGLPA 1211
>SB_27305| Best HMM Match : MFMR (HMM E-Value=0.53)
Length = 823
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = -1
Query: 296 SDASSLIMTPVPSQIATTVSMVLNQRNPTRSLSVENTSLK 177
S + +TP P + T + L +N + LSV+NTSL+
Sbjct: 55 SPTFEVTITPKPPAESPTETEQLEIQNDVKRLSVDNTSLE 94
>SB_43390| Best HMM Match : fn3 (HMM E-Value=9.3e-30)
Length = 1043
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 280 RLDASEKQHRYHNLLNDDHANEMLEGEGAG 369
+L + ++RY N+ DH+ ML G G+G
Sbjct: 917 KLSHNRAKNRYVNIQAYDHSRVMLRGAGSG 946
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,291,231
Number of Sequences: 59808
Number of extensions: 201615
Number of successful extensions: 608
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 826502419
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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