Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0745
         (428 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase, p...    28   2.3  
At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding ...    27   4.1  
At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar...    27   4.1  
At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar...    27   4.1  
At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding ...    27   4.1  
At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar...    27   4.1  
At1g80680.1 68414.m09467 nucleoporin family protein contains Pfa...    27   5.4  
At5g42120.1 68418.m05128 lectin protein kinase family protein co...    26   9.4  
At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) / br...    26   9.4  
At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) / br...    26   9.4  

>At3g08860.1 68416.m01030 alanine--glyoxylate aminotransferase,
           putative / beta-alanine-pyruvate aminotransferase,
           putative / AGT, putative similar to similar to SP|Q64565
           Alanine--glyoxylate aminotransferase 2, mitochondrial
           precursor (EC 2.6.1.44) (AGT 2) (Beta-alanine-pyruvate
           aminotransferase) {Rattus norvegicus}; contains Pfam
           profile PF00202: aminotransferase, class III
          Length = 481

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/17 (70%), Positives = 12/17 (70%)
 Frame = +2

Query: 68  FYSNVFRITEILCFECS 118
           FY NVFRIT  LCF  S
Sbjct: 449 FYGNVFRITPPLCFTLS 465


>At5g50920.1 68418.m06315 ATP-dependent Clp protease ATP-binding
           subunit / ClpC almost identical to ClpC GI:2921158 from
           [Arabidopsis thaliana]; contains Pfam profile PF02861:
           Clp amino terminal domain; contains Pfam profile
           PF00004: ATPase, AAA family; contains Pfam profile
           PF02151: UvrB/uvrC motif
          Length = 929

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 MMRLDASEKQHRYHNLLNDDHANEMLEGEGAGLAARVAE 390
           ++ L   E +   HN +  +H    L  EG G+AARV E
Sbjct: 180 VLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 218


>At4g22110.2 68417.m03197 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 104 CFECSLTSV*WCSRFKRDFCNNNLVLNLYSQRK 202
           C +C  +   WC+RF  DF +N     + S+ K
Sbjct: 110 CRDCKSSKSNWCARFADDFLSNTRRYGMTSRFK 142


>At4g22110.1 68417.m03196 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 389

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 104 CFECSLTSV*WCSRFKRDFCNNNLVLNLYSQRK 202
           C +C  +   WC+RF  DF +N     + S+ K
Sbjct: 110 CRDCKSSKSNWCARFADDFLSNTRRYGMTSRFK 142


>At3g48870.1 68416.m05338 ATP-dependent Clp protease ATP-binding
           subunit (ClpC) identical to AtClpC GI:5360574 from
           [Arabidopsis thaliana]; contains Pfam profiles  PF02861:
            Clp amino terminal domain and PF02151:  UvrB/uvrC motif
          Length = 952

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 274 MMRLDASEKQHRYHNLLNDDHANEMLEGEGAGLAARVAE 390
           ++ L   E +   HN +  +H    L  EG G+AARV E
Sbjct: 200 VLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLE 238


>At1g22430.1 68414.m02804 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 388

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 10/33 (30%), Positives = 16/33 (48%)
 Frame = +2

Query: 104 CFECSLTSV*WCSRFKRDFCNNNLVLNLYSQRK 202
           C +C  +   WC R+  DF +N     + S+ K
Sbjct: 109 CKDCKSSKTNWCDRYAEDFISNTRRYGMASRFK 141


>At1g80680.1 68414.m09467 nucleoporin family protein contains Pfam
           profile: PF04096 nucleoporin autopeptidase
          Length = 1046

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +1

Query: 283 LDASEKQHRYHNLLNDDHANEMLEGEGAGLAARV 384
           LD   K HR+  ++ DD +++ + GEG   AA V
Sbjct: 103 LDHIVKFHRHEVIVYDDESSKPVVGEGLNKAAEV 136


>At5g42120.1 68418.m05128 lectin protein kinase family protein
           contains Pfam domains PF00139: Legume lectins beta
           domain and PF00069: Protein kinase domain
          Length = 691

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 267 RRHDEARRIRKTAPLPQSPQRRP 335
           R  D  R IR  APLP  P RRP
Sbjct: 636 RVKDAVRIIRGEAPLPVLPARRP 658


>At3g49010.2 68416.m05354 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 266 VPSQIATTVSMVLNQRNPTRSLSVENTSLKRDCCYK 159
           +P ++A T+ + ++ R   RSL    T+++R   YK
Sbjct: 84  IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYK 119


>At3g49010.1 68416.m05353 60S ribosomal protein L13 (RPL13B) /
           breast basic conserved protein 1-related (BBC1)
          Length = 206

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -1

Query: 266 VPSQIATTVSMVLNQRNPTRSLSVENTSLKRDCCYK 159
           +P ++A T+ + ++ R   RSL    T+++R   YK
Sbjct: 84  IPKKLAPTIGIAVDHRRKNRSLEGLQTNVQRLKTYK 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,626,763
Number of Sequences: 28952
Number of extensions: 131873
Number of successful extensions: 334
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 334
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)