Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0744
         (708 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1WT58 Cluster: Hypothetical surface protein; n=1; Lact...    39   0.14 
UniRef50_A6EQD1 Cluster: Putative uncharacterized protein; n=1; ...    38   0.32 
UniRef50_Q5B5V4 Cluster: Putative uncharacterized protein; n=1; ...    33   5.2  
UniRef50_Q7P891 Cluster: DNA integration/recombination/invertion...    33   9.1  
UniRef50_A4B6Q9 Cluster: Sensor protein; n=3; Proteobacteria|Rep...    33   9.1  
UniRef50_Q01F74 Cluster: SrrA undefined product; n=1; Ostreococc...    33   9.1  
UniRef50_A2YEI1 Cluster: Putative uncharacterized protein; n=2; ...    33   9.1  

>UniRef50_Q1WT58 Cluster: Hypothetical surface protein; n=1;
           Lactobacillus salivarius subsp. salivarius UCC118|Rep:
           Hypothetical surface protein - Lactobacillus salivarius
           subsp. salivarius (strain UCC118)
          Length = 827

 Score = 38.7 bits (86), Expect = 0.14
 Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
 Frame = +3

Query: 474 EADRAVELRNCASALCSVISQELRV-RGILALLTTPKKSKDASTQTEKPDLNETSSQTEG 650
           EA +A++ +N   A  SV + E++   G+LA L T   SKDA TQT   D  +  +QT+G
Sbjct: 630 EAQKALQDKN---ASLSVANGEVKYWEGVLAALETKTPSKDAETQTPDTDKTDQGTQTDG 686


>UniRef50_A6EQD1 Cluster: Putative uncharacterized protein; n=1;
           unidentified eubacterium SCB49|Rep: Putative
           uncharacterized protein - unidentified eubacterium SCB49
          Length = 354

 Score = 37.5 bits (83), Expect = 0.32
 Identities = 24/89 (26%), Positives = 38/89 (42%)
 Frame = +1

Query: 265 KNHKHLKVINNKQFFKSDLIYESKDGDFLRAAGRKVAVINTLNRITNASRTIATFTGSDG 444
           KN+  + ++++   ++   +   KDGD +        V NT N+  N             
Sbjct: 101 KNYSEIHIVSHSNPWRGMSLKTKKDGDRITEKALNEYVANTKNKSINTVTNDTKIIFHSC 160

Query: 445 VKAANSDGLVKLIGQSNYETVPQLYARSY 531
               NS  L +L G  N ET+PQL+A  Y
Sbjct: 161 GLGDNSTLLKQLQGVFNKETLPQLFASPY 189


>UniRef50_Q5B5V4 Cluster: Putative uncharacterized protein; n=1;
           Emericella nidulans|Rep: Putative uncharacterized
           protein - Emericella nidulans (Aspergillus nidulans)
          Length = 802

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 23/62 (37%), Positives = 31/62 (50%)
 Frame = +3

Query: 465 RPSEADRAVELRNCASALCSVISQELRVRGILALLTTPKKSKDASTQTEKPDLNETSSQT 644
           RPS AD A   R CA  + S+I + +  R +  + T P  S   STQ E P L+ +  Q 
Sbjct: 658 RPSPADVASIRRKCALGILSLIPRPI-ARRLFGVPTEP-SSGVISTQVESPALSPSQFQA 715

Query: 645 EG 650
            G
Sbjct: 716 AG 717


>UniRef50_Q7P891 Cluster: DNA integration/recombination/invertion
           protein; n=3; Fusobacterium nucleatum subsp. vincentii
           ATCC 49256|Rep: DNA integration/recombination/invertion
           protein - Fusobacterium nucleatum subsp. vincentii ATCC
           49256
          Length = 360

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 23/76 (30%), Positives = 40/76 (52%)
 Frame = +1

Query: 325 YESKDGDFLRAAGRKVAVINTLNRITNASRTIATFTGSDGVKAANSDGLVKLIGQSNYET 504
           Y+S D  F R   R + +  + + + +   T AT   SD V  A+ D ++K+IG S+Y+T
Sbjct: 287 YDSFDNHF-RILFRDMGL--SYHSLHDTRHTFATLL-SDNV--ADKDAVIKMIGHSSYKT 340

Query: 505 VPQLYARSYPRSLESA 552
             ++Y     + L+ A
Sbjct: 341 TSEVYVHKNIKKLKEA 356


>UniRef50_A4B6Q9 Cluster: Sensor protein; n=3; Proteobacteria|Rep:
           Sensor protein - Alteromonas macleodii 'Deep ecotype'
          Length = 1147

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 13/45 (28%), Positives = 29/45 (64%)
 Frame = -2

Query: 161 FWGLLFQITRFTFLYVSAQLGKLIIYLLLFC*VYRLVCTI*IKHL 27
           F+G++ Q +R T++Y+   LG +++Y+L +  +Y+L      +H+
Sbjct: 53  FFGMVGQASRDTWIYLPIMLGPILVYVLGYKFIYKLTLVSKKQHI 97


>UniRef50_Q01F74 Cluster: SrrA undefined product; n=1; Ostreococcus
           tauri|Rep: SrrA undefined product - Ostreococcus tauri
          Length = 502

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
 Frame = +1

Query: 226 KRSSRGDTKDGLIKNHKHLKVINNKQFFKS--DLIYESKDGDFLR--AAGRKVAVINTLN 393
           KR+   +  D L+       +      F+S   +I+ S +   +R  ++ RKV +++ +N
Sbjct: 230 KRNVTSEVSDMLVDEVSRKLIGKEITTFESVMTIIHRSLEEAVIRVLSSARKVDILHDIN 289

Query: 394 RITNASRTIATFTGSDGV-KAANSDGLVKLIGQSNYETV 507
           R+  +   + TF G +GV K+ +   LV  + Q N+  +
Sbjct: 290 RVGKSRPYVITFVGVNGVGKSTSLSKLVYWLTQQNFSVM 328


>UniRef50_A2YEI1 Cluster: Putative uncharacterized protein; n=2;
           Oryza sativa (indica cultivar-group)|Rep: Putative
           uncharacterized protein - Oryza sativa subsp. indica
           (Rice)
          Length = 747

 Score = 32.7 bits (71), Expect = 9.1
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
 Frame = +1

Query: 391 NRITNAS----RTIATFTGSDGVKAANSDGLVKLIGQSNYETVPQLYARSYPRSLESAAY 558
           N++  AS    + + TFT +D VKA N   L  L+G   Y +V + Y      S+E   Y
Sbjct: 575 NKVKQASDPSCKELKTFTYADIVKATNGFALANLVGSGKYGSVYKEYGYGSKVSVEGDVY 634


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 662,802,885
Number of Sequences: 1657284
Number of extensions: 12696733
Number of successful extensions: 29641
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 28627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29634
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)