Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0744
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4G8.06c |trm12||tRNA methyltransferase Trm12 |Schizosaccharo...    27   3.5  
SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces po...    25   8.0  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    25   8.0  

>SPAC4G8.06c |trm12||tRNA methyltransferase Trm12
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 132 TSYLKEEAPKII*SCLRRYSMEIKLK 209
           TSY KE+ PK I  C R Y +E ++K
Sbjct: 57  TSYNKEDLPKDILDCPRIYLIEEEVK 82


>SPCC622.11 |||LMBR1-like membrane protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 562

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
 Frame = -2

Query: 170 LNYFWGLLFQITRF--TFLYVSAQLGK 96
           L YFWGLLF I      F+YV   + K
Sbjct: 197 LTYFWGLLFVIFLLGNGFVYVPVSMWK 223


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
 Frame = +1

Query: 280 LKVINNKQFFKSDLIYESKDGDFL-RAAG---RKVAVINTLNRITNASRTIATFTGSDGV 447
           + V+ ++   KS ++      DFL R  G   R+  V+  +NR + + +   T T SDG 
Sbjct: 30  ITVVRSQSSGKSSVLENIVGRDFLPRGTGIVTRRPLVLQLINRPSASGKNEETTTDSDGK 89

Query: 448 KAANS 462
              NS
Sbjct: 90  DQNNS 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,813,276
Number of Sequences: 5004
Number of extensions: 55965
Number of successful extensions: 135
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)