Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0744
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0316 + 2226010-2226256,2226956-2227047,2227143-2227180,222...    29   3.6  
02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467           29   3.6  
05_03_0119 - 8591659-8591877,8592347-8592347,8592540-8592628,859...    29   4.8  
03_06_0557 + 34704990-34705400,34706271-34706485,34707142-347073...    28   8.4  

>07_01_0316 +
           2226010-2226256,2226956-2227047,2227143-2227180,
           2227289-2227450,2227540-2227562,2227673-2227744,
           2227858-2228025,2228318-2228400,2228533-2228595,
           2228735-2228917
          Length = 376

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +1

Query: 439 DGVKAANSDGLVKLIGQSNY--ETVPQLYARSYPRSLESAA 555
           DG+  A   GLVK +G SNY  + +   YAR   R +  AA
Sbjct: 191 DGLADAYEQGLVKAVGVSNYNEKRLRDAYARMKKRGVPLAA 231


>02_02_0243 - 8226955-8227304,8227355-8228201,8228460-8229467
          Length = 734

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -1

Query: 687 RVLVLKNIFKKCFLRFEMKFRLNPVFQFALRHLYFSWEWSGVLVCRGL 544
           RVLVL ++F +CFL F   FR + +       ++ ++  S  +   GL
Sbjct: 11  RVLVLTSLFLQCFLFFSATFRKHRIPAILRASIWLAYLGSDAVAIYGL 58


>05_03_0119 -
           8591659-8591877,8592347-8592347,8592540-8592628,
           8593930-8594061
          Length = 146

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 534 QELRVRGILALLTTPKKSKDASTQTEKPDLNETSSQTE 647
           QE+R R   ALL   KK +D +  + K D N  ++++E
Sbjct: 106 QEMRPRARRALLRAQKKEQDRAAASTKDDENAKNAKSE 143


>03_06_0557 +
           34704990-34705400,34706271-34706485,34707142-34707367,
           34707447-34707532,34708030-34708121,34708232-34708471,
           34709455-34709750
          Length = 521

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/98 (24%), Positives = 43/98 (43%)
 Frame = +3

Query: 351 TGGRT*SRRDQHVESYYERQSHDRDVHGQ*WSQSREL*RPSEADRAVELRNCASALCSVI 530
           +GG T S     VE +Y      R    +  S +     PS + R+   +  A+A  +V+
Sbjct: 5   SGGATSSSSRNSVERFYLPPHSRRQQQQRLRSPTSPSLSPSPSPRSGRHKAAAAAPPAVV 64

Query: 531 SQELRVRGILALLTTPKKSKDASTQTEKPDLNETSSQT 644
           +      G+L    +   S D+S+ + KP +  T++ T
Sbjct: 65  AAAAVGAGVLTDGDSRVDSDDSSSTSSKPSVASTATAT 102


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,196,552
Number of Sequences: 37544
Number of extensions: 330235
Number of successful extensions: 645
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)