Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0744
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44920.2 68415.m05592 thylakoid lumenal 15 kDa protein, chlor...    31   0.57 
At2g44920.1 68415.m05591 thylakoid lumenal 15 kDa protein, chlor...    31   0.57 
At5g09330.1 68418.m01081 no apical meristem (NAM) family protein...    30   1.3  
At4g18900.1 68417.m02786 transducin family protein / WD-40 repea...    30   1.3  

>At2g44920.2 68415.m05592 thylakoid lumenal 15 kDa protein,
           chloroplast identical to SP|O22160 Thylakoid lumenal 15
           kDa protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains 8 pentapeptide repeats
          Length = 224

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 238 RGDTKDGLIK--NHKHLKVINNKQFFKSDLIYESKDGDFLRAAGRKVAVINTLNRITNAS 411
           R D K  +++  N K  K++    FF +DL         LR A   +A +  +N +TNA+
Sbjct: 110 RQDFKTSILRQANFKGAKLLG-ASFFDADLTGADLSEADLRGADFSLANVTKVN-LTNAN 167

Query: 412 RTIATFTGSDGVKAANSDG 468
              AT TG+   K +N  G
Sbjct: 168 LEGATVTGNTSFKGSNITG 186


>At2g44920.1 68415.m05591 thylakoid lumenal 15 kDa protein,
           chloroplast identical to SP|O22160 Thylakoid lumenal 15
           kDa protein, chloroplast precursor (p15) {Arabidopsis
           thaliana}; contains 8 pentapeptide repeats
          Length = 210

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 238 RGDTKDGLIK--NHKHLKVINNKQFFKSDLIYESKDGDFLRAAGRKVAVINTLNRITNAS 411
           R D K  +++  N K  K++    FF +DL         LR A   +A +  +N +TNA+
Sbjct: 110 RQDFKTSILRQANFKGAKLLG-ASFFDADLTGADLSEADLRGADFSLANVTKVN-LTNAN 167

Query: 412 RTIATFTGSDGVKAANSDG 468
              AT TG+   K +N  G
Sbjct: 168 LEGATVTGNTSFKGSNITG 186


>At5g09330.1 68418.m01081 no apical meristem (NAM) family protein
           similar to NAC1 (GI:7716952)  {Medicago truncatula};
           contains Pfam PF02365: No apical meristem (NAM) protein
          Length = 489

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
 Frame = -3

Query: 637 DEVSFKSGFS--VCVEASLLFLGVVRSASMPRTLSSWDMTEH 518
           +EV +  G S  VC+E   +F G+   +SMPRT +S+D+ E+
Sbjct: 286 NEVRYDPGVSAPVCLEEEGIFNGLPELSSMPRT-ASYDLVEN 326


>At4g18900.1 68417.m02786 transducin family protein / WD-40 repeat
           family protein contains 5 (4 significant) WD-40 repeats;
           similar to periodic tryptophan protein 1 homolog  
           (Keratinocyte protein IEF SSP 9502) (PWP1)(SP:Q13610)
           (PIR2:I39360) [Homo sapiens]
          Length = 461

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = +3

Query: 381 QHVESYYERQSHDRDVHGQ*WSQS-REL*RPSEADRAVELRNCASALCSV 527
           Q+ E  Y++ SH R V G  W++  R +   + AD+ V++ + A+  C +
Sbjct: 221 QNKEGNYKQGSHTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKI 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,373,787
Number of Sequences: 28952
Number of extensions: 281214
Number of successful extensions: 624
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)