Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0743
(654 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom... 33 0.027
SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual 32 0.083
SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces p... 30 0.34
SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces pomb... 27 1.8
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ... 27 3.1
SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.5
SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr 2... 25 7.2
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 25 9.5
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces... 25 9.5
>SPCC1442.14c |||adenosine
5'-monophosphoramidase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 133
Score = 33.5 bits (73), Expect = 0.027
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 90 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLT 242
CIFC I L E F DI P S+ H L IPK H + L+
Sbjct: 3 CIFCKIVKGDIPCVKLAETALSLAFLDIAPTSKGHALVIPKEHAAKMHELS 53
>SPCC4G3.02 |aph1||bis|Schizosaccharomyces pombe|chr 3|||Manual
Length = 182
Score = 31.9 bits (69), Expect = 0.083
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +3
Query: 123 GTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAD 251
G+++ Y F ++KP H+L IP+R + +K LT ++
Sbjct: 13 GSQVFYRTKLSAAFVNLKPILPGHVLVIPQRAVPRLKDLTPSE 55
>SPCC18.09c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 232
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 132 ILYEDDEVCVFRDIKPASRFHILTIPK-RHIEDVKSL 239
++Y DD+V + RD+ P S+ H+L + + H+ V L
Sbjct: 51 VIYYDDDVVLVRDMFPKSKMHLLLMTRDPHLTHVHPL 87
>SPBC3H7.13 |||FHA domain protein Far10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +2
Query: 218 YRRCQELDERRQELLNRMMSISRELLSKNNLSIEDARFGYHW 343
Y+RC EL+E + L N + +S+ L D R +H+
Sbjct: 158 YQRCVELNENLESLENGVEEVSKSLSWLETGKTRDNRNNHHY 199
>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 965
Score = 26.6 bits (56), Expect = 3.1
Identities = 15/45 (33%), Positives = 26/45 (57%)
Frame = +3
Query: 315 LKMHALGITGHRFVQSNICICIL*RLNPRWDSLEE*YSKKTLIGL 449
L M + I+ +FV+S C+ +L +NP W + + +SK +GL
Sbjct: 467 LVMKSWDISEDQFVES--CLGVL-EVNPEWSGIVKTWSKSHTLGL 508
>SPAC1002.21 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 148
Score = 25.8 bits (54), Expect = 5.5
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = -3
Query: 415 SNESHLGFRRYSMQMQMF-D*TKRWPVIPKACIF 317
S SHL + + +Q+F + +KRW + P+ CI+
Sbjct: 109 SKYSHLQEKNRTSFLQVFKERSKRWFLFPRLCIY 142
>SPBC1604.06c |||CBF/Mak21 family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 485
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 411 MNPISDSGAIVCRCKCLTERNGGQ*YPKRASS 316
++ ++D+ A +CR C RNG PK S
Sbjct: 33 IDEVNDAAAALCRVYCYLSRNGLLKRPKEDDS 64
>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1339
Score = 25.0 bits (52), Expect = 9.5
Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = -3
Query: 373 MQMFD*TKRWPVIPKACIFNTQIVF-RQQLSRYGHHSVK*FLSALVKLLTSSICLLGIVR 197
+ FD R+ VIPKA +++T ++ +S Y + + S + L++S + L
Sbjct: 222 LMFFDSMIRYSVIPKASLYDTVLILCSTYISTYSYSKLA--QSVIFNLISSPVSNLAFEN 279
Query: 196 I 194
+
Sbjct: 280 V 280
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 25.0 bits (52), Expect = 9.5
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -3
Query: 349 RWPVIPKACIFNTQIV 302
RWP +P+A I+N+ +
Sbjct: 241 RWPTVPQAVIYNSPYI 256
>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 316
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -3
Query: 466 DIFRRNKPIRVFFEYHSSNESHL 398
+ F KPI F E+ SS+ HL
Sbjct: 250 EYFTPRKPIDTFLEHRSSSHDHL 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,605,040
Number of Sequences: 5004
Number of extensions: 53472
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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