Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0743
(654 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0631 - 26728144-26728228,26728321-26728398,26728584-267286... 56 3e-08
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 43 2e-04
06_03_1059 + 27273267-27273316,27274077-27274163,27274245-272743... 42 6e-04
03_02_0838 + 11641484-11642030,11643614-11643650,11643784-116438... 36 0.021
05_06_0060 - 25266735-25267210,25267323-25267569,25267650-252683... 32 0.46
08_01_0563 - 4993428-4993751,4995478-4995675 29 3.2
08_01_0549 + 4811706-4811903,4813631-4813954 29 3.2
03_06_0040 + 31240164-31241102,31241280-31241897 27 9.9
03_05_0070 - 20478396-20478505,20478605-20478780,20481162-204812... 27 9.9
>04_04_0631 -
26728144-26728228,26728321-26728398,26728584-26728650,
26728748-26728824,26729961-26730012,26730248-26730294,
26730457-26730527
Length = 158
Score = 55.6 bits (128), Expect = 3e-08
Identities = 21/45 (46%), Positives = 35/45 (77%)
Frame = +2
Query: 254 ELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIA 388
+L++ M+++ R+LL+++ + E+ RFG+H PPF SV HLHLH +A
Sbjct: 81 QLVSHMLAVGRDLLNRDAPNSEEQRFGFHQPPFNSVDHLHLHCLA 125
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 90 CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKS 236
C+FC I + LYEDD D KP S H L IPKRH +++
Sbjct: 73 CVFCEIVKGNKPAYKLYEDDVCLCILDTKPLSTGHSLIIPKRHFPSLQA 121
>06_03_1059 +
27273267-27273316,27274077-27274163,27274245-27274392,
27274615-27274732,27274798-27274859
Length = 154
Score = 41.5 bits (93), Expect = 6e-04
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +3
Query: 93 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADK 254
IF I K + ++YED++V FRDI P + H+L IPK I D LT DK
Sbjct: 46 IFDKIIAKEIPSNVVYEDEKVLAFRDINPQAPVHVLVIPK--IRD--GLTGLDK 95
>03_02_0838 +
11641484-11642030,11643614-11643650,11643784-11643841,
11646176-11646265,11646796-11646913,11648093-11648277,
11648330-11648455,11648578-11648634,11648741-11648821,
11649068-11649102,11649265-11649354,11649443-11649599,
11649785-11649901
Length = 565
Score = 36.3 bits (80), Expect = 0.021
Identities = 17/57 (29%), Positives = 34/57 (59%)
Frame = +3
Query: 93 IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKNYL 263
+F I K + ++++D++V FRDI P + HI+ IPK + + L+ A++ ++
Sbjct: 195 VFDKIIKKEIPSTVVFDDEKVLAFRDINPQAPTHIVIIPKVK-DGLTGLSKAEERHV 250
>05_06_0060 -
25266735-25267210,25267323-25267569,25267650-25268345,
25268457-25268709,25268786-25269261,25270760-25270909
Length = 765
Score = 31.9 bits (69), Expect = 0.46
Identities = 18/62 (29%), Positives = 31/62 (50%)
Frame = +2
Query: 272 MSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGFIGRVIFKKNSYWFV 451
M +SR+ LS NN+S +D FG F+ V + + +G+ ++ + YWF
Sbjct: 527 MPVSRDTLSPNNVSFDDCHFGTQC--FQQVTKVKSRIVLKILRLGY-NVLLSDVDVYWFH 583
Query: 452 SP 457
+P
Sbjct: 584 NP 585
>08_01_0563 - 4993428-4993751,4995478-4995675
Length = 173
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 233 ELDERRQELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHL 370
+++E++ EL + + + S N ++ED R PP+R +KHL
Sbjct: 126 QVEEKKIELFHLLSQLK---YSGENSNLEDERILRQLPPYRELKHL 168
>08_01_0549 + 4811706-4811903,4813631-4813954
Length = 173
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = +2
Query: 233 ELDERRQELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHL 370
+++E++ EL + + + S N ++ED R PP+R +KHL
Sbjct: 126 QVEEKKIELFHLLSQLE---YSGENSNLEDERILRQLPPYRELKHL 168
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +2
Query: 263 NRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHL 376
NR S+ L + N S+ A +G HW R + +HL
Sbjct: 98 NRPRFPSQMLATFNGTSLGSANYGPHWRNLRRIATVHL 135
>03_05_0070 -
20478396-20478505,20478605-20478780,20481162-20481265,
20481346-20481504,20481718-20481857,20482222-20482311,
20482902-20482970,20484295-20484516,20486175-20486293,
20486377-20486492,20488058-20488146,20488790-20488883
Length = 495
Score = 27.5 bits (58), Expect = 9.9
Identities = 18/71 (25%), Positives = 38/71 (53%), Gaps = 4/71 (5%)
Frame = +2
Query: 227 CQELDERRQELLNRMMSIS---RELLSKNNLSIEDARFGYHWPPFRSV-KHLHLHTIAPE 394
C+ELDERR +L + + + + ++K +++ W F+ V + H +T+A +
Sbjct: 265 CKELDERRHDLKSELEGYNTGDSDDINKKK-ALDALNRMEKWNLFKDVPEEHHSYTVARD 323
Query: 395 SEMGFIGRVIF 427
S + +G V++
Sbjct: 324 SFLAHLGSVLW 334
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,660,833
Number of Sequences: 37544
Number of extensions: 300175
Number of successful extensions: 549
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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