Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0743
         (654 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)                   47   1e-05
SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)                28   5.8  
SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)              28   5.8  
SB_25457| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-08)         28   7.6  

>SB_50446| Best HMM Match : HIT (HMM E-Value=1.6e-36)
          Length = 432

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 23/57 (40%), Positives = 31/57 (54%)
 Frame = +3

Query: 93  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKNYL 263
           IF  I  K    EIL+EDD+   FRDI P +  H+L IPK+ I  +     +D+  L
Sbjct: 7   IFGKIIRKEIPAEILHEDDQCLAFRDINPQAPTHVLVIPKKPIRQLSMADDSDEQLL 63


>SB_15570| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +2

Query: 299 KNNLSIEDARFGYHWP-PFRSVKHLHLHTIAP 391
           + +L +ED++FGY +P PF SV  L +  I P
Sbjct: 207 QTSLFLEDSQFGYFYPLPFDSVVKLGIINIPP 238


>SB_19614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 603

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 290 TLSIWTSFC*VVLVGARQALDIFDMPFRYSQNMKTTGRFDVTKNAHFIVFIQYF 129
           T+S+    C   L G R  L   + PF + +N + +   +V KN H  +F   F
Sbjct: 267 TVSVGEGSCEGKLSGKRGHLFSQNYPFLFPRNKECSWEIEVEKNMHIHLFFDTF 320


>SB_48878| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
          Length = 1213

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 325 TLWVSLATVSFSQTFASAYYSA*IRDGIHW 414
           T+   +AT   S+T+ + YY +  RDG+ W
Sbjct: 333 TVVSGIATKGMSETWCTGYYLSYSRDGLEW 362


>SB_35607| Best HMM Match : Activin_recp (HMM E-Value=1.4)
          Length = 320

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +1

Query: 403 GIHWKSDIQKKLLLVCFAGICRLYFNVKCNWS 498
           G H  SDI   ++ VCF   CRL +   CN++
Sbjct: 210 GCHRSSDIHLNIVYVCFLNRCRLNY---CNFN 238


>SB_25457| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-08)
          Length = 369

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/60 (33%), Positives = 26/60 (43%)
 Frame = +2

Query: 230 QELDERRQELLNRMMSISRELLSKNNLSIEDARFGYHWPPFRSVKHLHLHTIAPESEMGF 409
           Q  ++   E L R      EL   N LS+E     Y  P F  V +  LH  A  SE+G+
Sbjct: 257 QAYEDIPAEYLERWNKWLAELKELNGLSVERC---YKPPDFGEVVNSQLHHFADASEVGY 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,998,192
Number of Sequences: 59808
Number of extensions: 378256
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1669334250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)