Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0743
         (654 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical pr...    47   1e-05
Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical pr...    45   5e-05
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    30   1.2  
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    30   1.2  
AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical ...    27   8.8  

>U53148-1|AAB37071.1|  175|Caenorhabditis elegans Hypothetical
           protein C26F1.7 protein.
          Length = 175

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
 Frame = +2

Query: 257 LLNRMMSISRELLSKNNL------SIEDA-RFGYHWPPFRSVKHLHLHTIAPESEMGFIG 415
           LL  M    RELL ++        ++ED  R G+H PP  SV HLH+H I P S+MG I 
Sbjct: 66  LLEEMEKTGRELLREHLKKKGEADTVEDMLRIGFHLPPLLSVHHLHMHIIYPISDMGLIS 125

Query: 416 R 418
           R
Sbjct: 126 R 126



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 22/60 (36%), Positives = 30/60 (50%)
 Frame = +3

Query: 90  CIFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSADKNYLTE 269
           C FC+I    +  + L E+    V  DIKP ++ H L + K+HI     LT AD   L E
Sbjct: 11  CKFCDIVKNKKELQ-LKENKSCVVINDIKPKAKNHYLVLSKQHIAKPTDLTVADVPLLEE 69


>Z71261-3|CAA95802.1|  130|Caenorhabditis elegans Hypothetical
           protein F21C3.3 protein.
          Length = 130

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +3

Query: 93  IFCNIANKLEGTEILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAD 251
           +F  I  K    +I++EDDE   F D+ P +  H L IPKR I+ +++   +D
Sbjct: 22  LFGKIIRKEIPAKIIFEDDEALAFHDVSPQAPIHFLVIPKRRIDMLENAVDSD 74


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 132 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAD 251
           I Y      VF ++KP +  H+L  PKR +  +  LT A+
Sbjct: 311 IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAE 350


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +3

Query: 132 ILYEDDEVCVFRDIKPASRFHILTIPKRHIEDVKSLTSAD 251
           I Y      VF ++KP +  H+L  PKR +  +  LT A+
Sbjct: 311 IFYSTPHSFVFVNLKPVTDGHVLVSPKRVVPRLTDLTDAE 350


>AC091125-1|AAK27889.2|  313|Caenorhabditis elegans Hypothetical
           protein Y67D2.4 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
 Frame = +1

Query: 421 DIQKKLLLVCFAGICRLYFNVKCNWSLN---KYFT*IQRDRHNFDGC 552
           DIQ+ L L C A   R+  ++   W  +   KYF  + R+R   D C
Sbjct: 257 DIQQVLALTCAANDFRIQQSIGERWDFDRAAKYFIQLYRNRKFKDSC 303


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,240,748
Number of Sequences: 27780
Number of extensions: 292996
Number of successful extensions: 589
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)