Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0742
         (694 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0W6T0 Cluster: Sensor protein; n=1; uncultured methano...    33   6.6  
UniRef50_A3IRJ7 Cluster: Sensor protein; n=3; Bacteria|Rep: Sens...    33   8.8  
UniRef50_Q7YYR9 Cluster: Similarity to rod-like tail of several ...    33   8.8  

>UniRef50_Q0W6T0 Cluster: Sensor protein; n=1; uncultured
           methanogenic archaeon RC-I|Rep: Sensor protein -
           Uncultured methanogenic archaeon RC-I
          Length = 616

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -3

Query: 548 IFSKVLDAFFIHFSDGNFIVINNQVLQTF 462
           IF+ V DA FIH  DG+ I +N+++LQ +
Sbjct: 134 IFNGVSDAIFIHRLDGSIIEVNDRMLQMY 162


>UniRef50_A3IRJ7 Cluster: Sensor protein; n=3; Bacteria|Rep: Sensor
            protein - Cyanothece sp. CCY 0110
          Length = 3557

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -3

Query: 560  DVLKIFSKVLDAFFIHFSDGNFIVINNQVLQTFS*HLHNFL 438
            D+  +F+   DA FIH  DG F+ IN++V++       N L
Sbjct: 2829 DLRTLFNNSYDALFIHDLDGRFLDINDRVVELLGTSRENIL 2869


>UniRef50_Q7YYR9 Cluster: Similarity to rod-like tail of several
           myosins, possible; n=3; Cryptosporidium|Rep: Similarity
           to rod-like tail of several myosins, possible -
           Cryptosporidium parvum
          Length = 577

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 511 KCMKNASRTFENIFNTSIKLEQNISQISLLKHNNKFIKIGLSS 639
           +C+KN ++  E++ N   K+  ++  +S+ K NN F  +G  S
Sbjct: 298 QCVKNIAKLAESVNNLQEKISNHLIGLSIAKSNNSFSVVGSKS 340


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 603,501,382
Number of Sequences: 1657284
Number of extensions: 11744710
Number of successful extensions: 24013
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24002
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)