Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0742
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.1  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    26   4.5  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    26   5.9  

>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 547

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 191 NEQTHQRD*DYYLLF*IVK*NKLFCT*SLVIKFCAILGNFRFLSWI 328
           NE  HQRD  Y +   + +  +L CT  +V  FC  L     L +I
Sbjct: 312 NEHEHQRDPAYAIRTALTRGVRLLCTEPIVQAFCMYLVFINILLYI 357


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/41 (21%), Positives = 25/41 (60%)
 Frame = -3

Query: 194  HLSSDIQIYL*SLNLAFSVAHPVQVYLNVRQLVKVCFSKYI 72
            H+ S  Q+    L++ F++AH +++ +  + ++ +C+ K +
Sbjct: 1938 HIISVHQVTRSDLHVLFAIAHQMRIIVERQGVIDLCYGKLL 1978


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = +1

Query: 493 IKLPSEKCMKNASRTFENI----FNTSIKLEQNISQISLLKHNNKFIKIGLSSQLINNGT 660
           +  PS     ++   F +I     NTSIK  +NIS  ++  + +K I+   ++ +IN+  
Sbjct: 158 VSFPSSSTPPSSDSNFSSIQNTDLNTSIKFTENISANAIHVNQDKVIR-SANNLIINSQP 216

Query: 661 II 666
           I+
Sbjct: 217 IL 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,754,217
Number of Sequences: 5004
Number of extensions: 56450
Number of successful extensions: 120
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)