Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0742
         (694 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0269 - 16617292-16618852,16622763-16623562                       29   4.6  
03_02_0849 - 11768191-11771412                                         28   6.1  

>12_02_0269 - 16617292-16618852,16622763-16623562
          Length = 786

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -2

Query: 426 NSQEDSKTSFMFDS*YRQTNELNACNIFTLNFNIQLRNRKLP 301
           N ++D      F +      EL +CN+  L+FN+ L   + P
Sbjct: 712 NDEDDQTDMVKFAALATSLRELGSCNVRCLDFNVALMEHRQP 753


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 34  RKIQNIQLIYEHVMYLLKQTFTSC 105
           R + ++Q+ Y H+ Y LKQ FT C
Sbjct: 411 RILPSLQISYHHLPYHLKQLFTLC 434


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,658
Number of Sequences: 37544
Number of extensions: 261716
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)