Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0741
         (330 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    32   0.026
SPBC14C8.05c |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharo...    25   3.0  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   3.9  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    24   5.2  
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb...    24   6.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    24   6.8  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    23   9.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    23   9.0  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    23   9.0  

>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 31.9 bits (69), Expect = 0.026
 Identities = 34/94 (36%), Positives = 48/94 (51%), Gaps = 1/94 (1%)
 Frame = +1

Query: 25  ASLLLRTT-SDISDMPQTSELRLSSSMPPAVVARGSDDVETCSAPGCIHTASRLLLNMDE 201
           ASLL  TT S IS   +TS+  L S    +V  + S++V T   P    T+S    N +E
Sbjct: 275 ASLLPSTTESSISKDHETSQAPLGSE---SVDTQASENVTTKPEPPVPFTSSEYR-NTEE 330

Query: 202 KV*PMRQFLRLCLRVILENTRIPDDKTSVNTFSI 303
           +     Q+L L +R ILEN +   D+T   T S+
Sbjct: 331 E-----QYLNL-IRYILENGQSRPDRTGTGTRSV 358


>SPBC14C8.05c
           |meu17||glucan-alpha-1,4-glucosidase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -2

Query: 230 RRNCRMGHTFSSIFSRSLEAV*IHPGALHVSTSSD 126
           ++   MGH  ++I    + A  I+PG +  S S+D
Sbjct: 38  QKGIAMGHMLNNIGDSGMHAKDINPGCIIASPSTD 72


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 3.9
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
 Frame = -3

Query: 244 PASKVVEIVAWVTLFHPYSAGVLRLYEYTQVRYTF----PRHLIPGRPLQVAWMKKVSVH 77
           P+ ++ +++  +  F+P +    R+YEY    Y F    P  ++    ++ + M    ++
Sbjct: 134 PSIRLWDVIRTINSFNPRTYCESRIYEYMVPTYAFVPPKPSSILGNCIMKNSPMPAEPIN 193

Query: 76  *FVACRLCRWLFVEEG 29
                +L R LF EEG
Sbjct: 194 KENINQLSRSLFYEEG 209


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 134  SSDPRATTAGGMDEESLS 81
            SS PR T+ G ++EE+LS
Sbjct: 963  SSSPRLTSFGDVEEEALS 980


>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 741

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 206 CDPCDNFYDFACG 244
           CDP D F  F CG
Sbjct: 695 CDPNDRFVHFECG 707


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 43  TTSDISDMPQTSELRLSSSMPPA 111
           ++ D+ + P   E RLSS  PPA
Sbjct: 313 SSRDLQNHPTVDESRLSSVAPPA 335


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 58   SDMPQTSELRLSSSMPPAVVARGSD 132
            SD+  T E   S+S+PPA+    ++
Sbjct: 1286 SDLTTTQEASSSASVPPAIAPESAN 1310


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 10  LAAFIASLLLRTTSDISDMPQTSELRLSSSMP 105
           LAA +A  L    S  S++ +TSEL   SS P
Sbjct: 136 LAALLAPALSYPKSGKSNLIETSELSCLSSSP 167


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 23.4 bits (48), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 46  TSDISDMPQTSELRLSSSMPPAVVARGSDDVETCSA 153
           +S I   P TS L  SSS+P +  +  S  + T S+
Sbjct: 527 SSSIISSPMTSVLSSSSSIPTSSSSDFSSSITTISS 562


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,468,172
Number of Sequences: 5004
Number of extensions: 29676
Number of successful extensions: 64
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)