Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0741
         (330 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0182 + 1437110-1438984                                           33   0.041
08_02_1236 + 25454371-25456801,25456891-25457177,25457258-254574...    29   0.89 
07_03_0856 - 22037345-22037665,22037962-22038108,22038201-220389...    27   2.7  
01_06_0819 - 32224383-32225831                                         27   4.7  
08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-26...    26   6.2  
03_06_0157 - 32039020-32039175,32039267-32039338,32039478-320396...    26   6.2  
09_02_0307 + 7131031-7131326,7131414-7131560,7132579-7132711,713...    26   8.3  
08_02_1078 + 24179558-24179936,24180577-24180634,24180721-241808...    26   8.3  

>11_01_0182 + 1437110-1438984
          Length = 624

 Score = 33.5 bits (73), Expect = 0.041
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +1

Query: 28  SLLLRTTSDISDMPQTSELRLSSSMPPAVVARGSDDVETCSAPGCIHTASRL 183
           SLLLR  S +  +P    L LSS +PP      S  +   S+PGC+ +A  L
Sbjct: 74  SLLLRLASPLLPVPHRLRLLLSSPLPPTTFLANS-FLLASSSPGCLPSALSL 124


>08_02_1236 +
           25454371-25456801,25456891-25457177,25457258-25457416,
           25457561-25457740,25457823-25458017,25459059-25459157,
           25459508-25460137,25460250-25460591
          Length = 1440

 Score = 29.1 bits (62), Expect = 0.89
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 88  LSSSMPPAVVARGSDDVETCSAPGCIHT 171
           L +   PAV+  G + VE+ +APGC  T
Sbjct: 56  LEAKPDPAVLGEGGEAVESNAAPGCAET 83


>07_03_0856 -
           22037345-22037665,22037962-22038108,22038201-22038978,
           22039092-22039384,22039663-22039758
          Length = 544

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 14/25 (56%), Positives = 19/25 (76%)
 Frame = -1

Query: 321 LELISDN*KRVH*GLVVWDPSIFKN 247
           +ELIS N KR H G V+W+PS F++
Sbjct: 437 IELIS-NKKREHPGGVLWEPSDFEH 460


>01_06_0819 - 32224383-32225831
          Length = 482

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = -3

Query: 226 EIVAWVTLFHPYSAGVLRLYEYTQVRYTFPRHLIPGRPLQVAWMKKVSVH*FVACRLCRW 47
           E+VAW T+   Y       +     R     H+ P R   VA +   + H  V   +   
Sbjct: 182 EVVAWTTMITSYRNRGRTFHALATFRRMLAAHVAPNRVTMVAALGACAAHCAVDTGIWIH 241

Query: 46  LFVE-EGW 26
            +V+ +GW
Sbjct: 242 EYVQKQGW 249


>08_01_0036 - 267236-268165,268255-268299,268485-268574,269485-269805,
            269895-270098,271532-271664,271810-271881,273106-273168,
            273252-275034,275169-275217
          Length = 1229

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 206  CDPCDNFYDFACGSFL 253
            CD CD  Y FAC   L
Sbjct: 980  CDECDTMYHFACVKLL 995


>03_06_0157 -
           32039020-32039175,32039267-32039338,32039478-32039602,
           32039678-32040559,32040623-32040692,32041248-32041739,
           32041985-32042044,32042541-32042618,32043322-32044344
          Length = 985

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 40  RTTSDISDMPQTSELRLSSSMPPAVVARGSDDVETCSAPGCIHTASRLLLNMDEK 204
           RT  D+++  +   + L +     VVA+  DDVE     G       + + + EK
Sbjct: 229 RTKKDVTEKDEKPVVELEAEKEDEVVAQDGDDVEEQKGEGEEEMEEEVQVEVQEK 283


>09_02_0307 +
           7131031-7131326,7131414-7131560,7132579-7132711,
           7133115-7133207,7133421-7133717
          Length = 321

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +1

Query: 64  MPQTSELRLSSSMPPAVVARGS 129
           MP    LRL S  PPA VA GS
Sbjct: 1   MPPPLLLRLRSPAPPAAVAAGS 22


>08_02_1078 +
           24179558-24179936,24180577-24180634,24180721-24180804,
           24180908-24181010,24181359-24181649
          Length = 304

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 115 VARGSDDVETCSAPGCIHTASRLLLNMDE 201
           V  G +D + CS PG +H  S +  N DE
Sbjct: 101 VEGGEEDFD-CSEPGSLHRCSWITKNSDE 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,153,197
Number of Sequences: 37544
Number of extensions: 214125
Number of successful extensions: 453
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 453
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 447336660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)