Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0741
(330 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.003
SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.024
SB_2509| Best HMM Match : Chordopox_A13L (HMM E-Value=3.6) 34 0.032
SB_21006| Best HMM Match : GASA (HMM E-Value=0.88) 31 0.30
SB_56007| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12) 31 0.30
SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8) 30 0.40
SB_31479| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.60028e... 29 0.69
SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072) 29 0.69
SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17) 29 0.92
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.92
SB_25725| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_46387| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_56372| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12) 27 3.7
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0) 26 8.5
SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40) 26 8.5
>SB_45487| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1236
Score = 37.1 bits (82), Expect = 0.003
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = +2
Query: 209 DPCDNFYDFACGSFLK 256
DPCDNFY++ACGS++K
Sbjct: 155 DPCDNFYEYACGSWVK 170
Score = 37.1 bits (82), Expect = 0.003
Identities = 12/16 (75%), Positives = 16/16 (100%)
Frame = +2
Query: 209 DPCDNFYDFACGSFLK 256
DPCDNFY++ACGS++K
Sbjct: 797 DPCDNFYEYACGSWVK 812
>SB_59387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 34.3 bits (75), Expect = 0.024
Identities = 17/57 (29%), Positives = 27/57 (47%)
Frame = +1
Query: 145 CSAPGCIHTASRLLLNMDEKV*PMRQFLRLCLRVILENTRIPDDKTSVNTFSIITDQ 315
C GCI A +L MDE V P R F + L+++ +P + + F + +Q
Sbjct: 107 CETKGCISAAFSILNKMDETVNPCRDFYQYACGKWLKDSVVPAGNSKWSAFHQVAEQ 163
>SB_2509| Best HMM Match : Chordopox_A13L (HMM E-Value=3.6)
Length = 375
Score = 33.9 bits (74), Expect = 0.032
Identities = 10/15 (66%), Positives = 14/15 (93%)
Frame = +2
Query: 209 DPCDNFYDFACGSFL 253
DPCDNFY++ACG ++
Sbjct: 231 DPCDNFYEYACGGWM 245
>SB_21006| Best HMM Match : GASA (HMM E-Value=0.88)
Length = 288
Score = 30.7 bits (66), Expect = 0.30
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +2
Query: 200 KKCDPCDNFYDFACGSFLKILGSQTTRPQ*TRF-QLSLINSK 322
+K DPC +FY FACG + + P T+F QL+ N K
Sbjct: 145 EKVDPCHDFYMFACGGWKRDHPIPDDEPYWTQFIQLTEENFK 186
>SB_56007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 66
Score = 30.7 bits (66), Expect = 0.30
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = +2
Query: 209 DPCDNFYDFACGSFLK 256
+PCD+FY +ACG ++K
Sbjct: 11 NPCDDFYGYACGGWIK 26
>SB_51402| Best HMM Match : Peptidase_M13_N (HMM E-Value=1.9e-12)
Length = 1206
Score = 30.7 bits (66), Expect = 0.30
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 209 DPCDNFYDFACGSFLK 256
DPCDNFY +AC +++
Sbjct: 235 DPCDNFYHYACDGWIR 250
>SB_26699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.8)
Length = 306
Score = 30.3 bits (65), Expect = 0.40
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = +2
Query: 209 DPCDNFYDFACGSF 250
DPCD+FY +ACG +
Sbjct: 127 DPCDDFYQYACGGW 140
>SB_31479| Best HMM Match : Peptidase_M13_N (HMM
E-Value=1.60028e-42)
Length = 627
Score = 29.5 bits (63), Expect = 0.69
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +2
Query: 200 KKCDPCDNFYDFACGSF 250
K DPC++FY +ACG +
Sbjct: 208 KSVDPCEDFYRYACGGW 224
>SB_7161| Best HMM Match : Peptidase_M13_N (HMM E-Value=0.00072)
Length = 263
Score = 29.5 bits (63), Expect = 0.69
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = +2
Query: 203 KCDPCDNFYDFACGSFLK 256
K +PC++F+ +ACG ++K
Sbjct: 79 KSEPCNDFFQYACGGWMK 96
>SB_9732| Best HMM Match : SH3_1 (HMM E-Value=2e-17)
Length = 1860
Score = 29.1 bits (62), Expect = 0.92
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = +2
Query: 212 PCDNFYDFACGSFLK 256
PCD+FY +ACG ++K
Sbjct: 1135 PCDDFYLYACGGWMK 1149
>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1084
Score = 29.1 bits (62), Expect = 0.92
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 209 DPCDNFYDFACGSFLK 256
DPC +FY +ACG ++K
Sbjct: 108 DPCVDFYSYACGGWVK 123
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/54 (25%), Positives = 27/54 (50%)
Frame = +1
Query: 145 CSAPGCIHTASRLLLNMDEKV*PMRQFLRLCLRVILENTRIPDDKTSVNTFSII 306
C++ C+ TAS L+ ++D V P F +++ +P D S + + I+
Sbjct: 87 CTSEECVLTASDLVRSLDPSVDPCVDFYSYACGGWVKSNPVPKDTESWDKWRIL 140
>SB_25725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 489
Score = 28.7 bits (61), Expect = 1.2
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 209 DPCDNFYDFACGSFLK 256
DPC +FY +ACG +++
Sbjct: 16 DPCKDFYGYACGGWIR 31
>SB_46387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 28.7 bits (61), Expect = 1.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 212 PCDNFYDFACGSFLK 256
PC+NFY +ACG +++
Sbjct: 15 PCNNFYRYACGGWIR 29
>SB_56372| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 28.3 bits (60), Expect = 1.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 127 SDDVETCSAPGCIHTASRLLLNMDEKV*PMRQFLR 231
SDD C P C+ AS +L NM+ P +F +
Sbjct: 81 SDDRNACYTPKCLSIASVILANMNLTRDPCEEFAK 115
>SB_42688| Best HMM Match : PB1 (HMM E-Value=0.12)
Length = 1338
Score = 27.1 bits (57), Expect = 3.7
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +1
Query: 7 VLAAFIASLLLRTTSDISDMPQTSELRLSSSMPPAVVARGSDDVETCSAPGCIHTASRL 183
++ +F AS + SD+ D+ L S+ + SDD+ P C HT + L
Sbjct: 966 MVESFTASETAQQPSDVQDLEWDE---LGWSLDDGMYTDSSDDLVVVPVPACFHTNTPL 1021
>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3293
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Frame = +2
Query: 161 VFIQPQDSC*IWMKKCDPCD--NFYDFAC 241
++ + ++ C W K CD C N + AC
Sbjct: 2315 IYERAKEKCPAWQKTCDTCGELNHFSVAC 2343
>SB_37699| Best HMM Match : Peptidase_M13_N (HMM E-Value=0)
Length = 876
Score = 25.8 bits (54), Expect = 8.5
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = +2
Query: 212 PCDNFYDFACGSFLK 256
PC +FY F CG +++
Sbjct: 302 PCTDFYQFVCGGWMQ 316
>SB_24958| Best HMM Match : S-methyl_trans (HMM E-Value=1.6e-40)
Length = 560
Score = 25.8 bits (54), Expect = 8.5
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 232 VVEIVAWVTLFHPYSAGVLRLYEYTQV-RYTFPRHL 128
+V + + F PY++ V R Y +T+V RY F R+L
Sbjct: 444 LVFFAMFTSCFKPYTSSVSR-YVFTRVFRYVFTRYL 478
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,480,803
Number of Sequences: 59808
Number of extensions: 245856
Number of successful extensions: 508
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 507
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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