Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0741
         (330 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   2.9  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   3.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   3.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   3.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   3.9  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    21   3.9  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   3.9  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              20   8.9  

>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.4 bits (43), Expect = 2.9
 Identities = 8/22 (36%), Positives = 10/22 (45%)
 Frame = -1

Query: 174 GCMNTPRCATRFHVI*SPGDHC 109
           G +N   CA   H +   G HC
Sbjct: 28  GQVNDSACAANCHSLGKAGGHC 49


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 178 LRLYEYTQVRYTFPRHLI 125
           LR+Y    V Y   RHLI
Sbjct: 166 LRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 178 LRLYEYTQVRYTFPRHLI 125
           LR+Y    V Y   RHLI
Sbjct: 166 LRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 178 LRLYEYTQVRYTFPRHLI 125
           LR+Y    V Y   RHLI
Sbjct: 217 LRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -3

Query: 178 LRLYEYTQVRYTFPRHLI 125
           LR+Y    V Y   RHLI
Sbjct: 166 LRIYRNGTVNYLMRRHLI 183


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +3

Query: 273 RQDLSEHVFNYH*STP 320
           R  L  H++ YH S P
Sbjct: 48  RNSLMTHIYTYHKSRP 63


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +3

Query: 21  HRQPSSTNN 47
           HRQP+ TNN
Sbjct: 97  HRQPAPTNN 105


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 3.9
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +1

Query: 91  SSSMPPAVVARGSDDVETCSAPGCIHTASRLL 186
           S S+P +    G  DVE+ ++ G    A+ LL
Sbjct: 238 SGSLPASPADSGVSDVESSTSSGGNEDANLLL 269


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 20.6 bits (41), Expect = 5.1
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 252 KNDPQAKS*KLSHGSHFFIHIQQ 184
           K+D Q +   +S   H F+ + Q
Sbjct: 542 KHDHQGRPISISKNQHLFVELDQ 564


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.8 bits (39), Expect = 8.9
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +1

Query: 103 PPAVVARGSDDVETCSAP 156
           PP V  R   D+ET + P
Sbjct: 340 PPLVWRRNGADLETLNEP 357


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,864
Number of Sequences: 438
Number of extensions: 1969
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7342137
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)