Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0741
         (330 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) famil...    26   7.0  
At1g63010.2 68414.m07116 SPX (SYG1/Pho81/XPR1) domain-containing...    26   7.0  
At1g63010.1 68414.m07115 SPX (SYG1/Pho81/XPR1) domain-containing...    26   7.0  
At5g47390.1 68418.m05840 myb family transcription factor contain...    25   9.3  
At3g13210.1 68416.m01653 crooked neck protein, putative / cell c...    25   9.3  
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    25   9.3  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    25   9.3  

>At3g13782.1 68416.m01740 nucleosome assembly protein (NAP) family
           protein similar to nucleosome assembly protein 1
           [Glycine max] GI:1161252; contains Pfam profile PF00956:
           Nucleosome assembly protein (NAP)
          Length = 329

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 107 LQWSPGDQMTWKRVAHLGVFIQPQDSC*IWMKKCDPCDNFYDF 235
           ++W PG  +T K V        P+    I M K + C++F++F
Sbjct: 211 IEWFPGKCLTHKVVVKKKTKKGPKKVNNIPMTKTENCESFFNF 253


>At1g63010.2 68414.m07116 SPX (SYG1/Pho81/XPR1) domain-containing
           protein contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 196 PYSAGVLRLYEYTQVRYTFPRHLIPGRPLQVAWM 95
           P  AG+L++ ++   ++TF +  +PG  + VAW+
Sbjct: 389 PALAGLLQI-KFKFYKFTFNQSTLPGWVMAVAWL 421


>At1g63010.1 68414.m07115 SPX (SYG1/Pho81/XPR1) domain-containing
           protein contains Pfam profile PF03105: SPX domain
          Length = 699

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 196 PYSAGVLRLYEYTQVRYTFPRHLIPGRPLQVAWM 95
           P  AG+L++ ++   ++TF +  +PG  + VAW+
Sbjct: 389 PALAGLLQI-KFKFYKFTFNQSTLPGWVMAVAWL 421


>At5g47390.1 68418.m05840 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 365

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/53 (22%), Positives = 23/53 (43%)
 Frame = +1

Query: 25  ASLLLRTTSDISDMPQTSELRLSSSMPPAVVARGSDDVETCSAPGCIHTASRL 183
           +SL      ++ D+P   +     ++P     +G+D +    AP  +H  S L
Sbjct: 155 SSLFDMVPDEVGDIPMDLQEPEEDNIPVETEMQGADSIHQTLAPSSLHAPSIL 207


>At3g13210.1 68416.m01653 crooked neck protein, putative / cell
           cycle protein, putative similar to Swiss-Prot:P17886
           crooked neck protein [Drosophila melanogaster]
          Length = 657

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 92  LHPCHLQWSPGDQMTWKRVA 151
           L+  +L+WSPG+   W++ A
Sbjct: 435 LYERYLEWSPGNCYAWRKYA 454


>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -2

Query: 278 LSSGILVFSRMTRKQSRRNCRMGHTFSSIFSRS 180
           LS G LV S++  ++   NCR+G     ++++S
Sbjct: 228 LSLGKLVHSQVMVRELELNCRLGTALVDMYAKS 260


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 164 IHPGALHVSTSSDPRATTAGGMDEESLS 81
           +HP + H+  +S P A+TAG   +   S
Sbjct: 26  VHPLSPHIPPASSPSASTAGNHHQRIFS 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,869,105
Number of Sequences: 28952
Number of extensions: 160858
Number of successful extensions: 319
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)