Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0740
         (631 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine rece...    29   3.6  
U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical pr...    27   8.4  
L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated p...    27   8.4  

>U56963-5|AAB38122.3|  323|Caenorhabditis elegans Serpentine
           receptor, class v protein30 protein.
          Length = 323

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = -1

Query: 505 IMFNNRIELEYVPKKKYAMHIAFCSMVISSRKCRH*IICHLEFTSTL 365
           + +N+  ELEYV  K         +M+I S  C   +IC++    T+
Sbjct: 155 VYYNSMEELEYVVPKDILSRNTLTAMLILSSMCLICVICYISLWITI 201


>U58762-3|AAM15611.1|  331|Caenorhabditis elegans Hypothetical
           protein T27F7.2c protein.
          Length = 331

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 486 LNSNMCLRKNMLCTLHFVQW 427
           L  +  L  ++ CTLHFVQW
Sbjct: 249 LTHHSVLESHLPCTLHFVQW 268


>U58762-2|AAK39302.1|  722|Caenorhabditis elegans Hypothetical
           protein T27F7.2b protein.
          Length = 722

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 486 LNSNMCLRKNMLCTLHFVQW 427
           L  +  L  ++ CTLHFVQW
Sbjct: 618 LTHHSVLESHLPCTLHFVQW 637


>U58762-1|AAK39301.1|  732|Caenorhabditis elegans Hypothetical
           protein T27F7.2a protein.
          Length = 732

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 486 LNSNMCLRKNMLCTLHFVQW 427
           L  +  L  ++ CTLHFVQW
Sbjct: 628 LTHHSVLESHLPCTLHFVQW 647


>L14433-8|AAA27971.3| 1249|Caenorhabditis elegans Uncoordinated
           protein 36 protein.
          Length = 1249

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 322 TKFYYLKNNLVFTLF*YFLHQSDIIRIYIL---DYNHFD 215
           T+F ++KNNL+   F  F   S +IR Y L   DY++ D
Sbjct: 812 TQFNFMKNNLIHLAF--FATPSGMIRYYNLTLQDYDYID 848


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,704,698
Number of Sequences: 27780
Number of extensions: 242784
Number of successful extensions: 360
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)