Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0739
(638 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 89 4e-18
SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 55 6e-08
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 52 5e-07
SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 35 0.049
SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064
SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 33 0.26
SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044) 31 0.79
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 30 1.8
SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2
SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6
SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6) 28 7.4
SB_8959| Best HMM Match : PAN (HMM E-Value=0.013) 28 7.4
SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 9.7
SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 27 9.7
SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 9.7
SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 9.7
SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 9.7
SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13)
Length = 562
Score = 88.6 bits (210), Expect = 4e-18
Identities = 38/101 (37%), Positives = 57/101 (56%)
Frame = +3
Query: 255 GGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 434
GG +K+ K P +G+V+++V ACG+ F DL+ RQG PK P++ GFEC+G +
Sbjct: 48 GGNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVV 107
Query: 435 EQVGENVTNFKVGDQVVALPEYRAWPSWCLYRPSTCTRCPK 557
E++GE VT VG +V+ L Y W + C P+
Sbjct: 108 EELGEEVTGIDVGARVICLAPYGMWTEYACVDAKMCYVMPE 148
Score = 36.7 bits (81), Expect = 0.016
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +2
Query: 512 ELVSVPAQYVYALPEGMSALDAVAITTNYVVAYLLLFEMANL 637
E V A+ Y +PE M+ + AI Y+ A+L+LF + NL
Sbjct: 134 EYACVDAKMCYVMPEAMTFEEGAAIPITYLTAHLILFHLGNL 175
>SB_27978| Best HMM Match : HycH (HMM E-Value=0.12)
Length = 316
Score = 54.8 bits (126), Expect = 6e-08
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%)
Frame = +3
Query: 255 GGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 434
GG +++ I P P + E EVLIRV LN D + R+G+ PP ILG E +G +
Sbjct: 36 GGPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEILGLEVSGIV 95
Query: 435 EQVGENVT-NFKVGDQVVALPEYRAWPSWCLYRPSTCTRCPK 557
E++G ++ GD+V+AL + + + S PK
Sbjct: 96 EELGSACNLGWRKGDKVMALVPGGGYAEFAAVQESHVMPIPK 137
>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
Length = 796
Score = 51.6 bits (118), Expect = 5e-07
Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%)
Frame = +3
Query: 315 VLIRVKACGLNFQDLIVRQGAIDSPPKT---PFILGFECAGEIEQVGENVTNFKVGDQVV 485
V+++ ACG+N+ D+ +R G +S K P GFE +G I+ GENVT F++G +V
Sbjct: 40 VVVKTFACGVNYADICIRWGLYESAKKFVGWPITPGFEFSGVIQWKGENVTEFEIGQEVF 99
Query: 486 ALPEYRAWPSWCLYRP 533
+ ++ S C+ P
Sbjct: 100 GASLFGSY-SECIRVP 114
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +2
Query: 509 AELVSVPAQYVYALPEGMSALDAVAITTNYVVAYLLLFEMAN 634
+E + VP ++ALP+ MS +A + T + A+ FE+A+
Sbjct: 108 SECIRVPKNQLFALPKKMSKNEAAGLPTVALTAWYAFFELAH 149
>SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 395
Score = 45.6 bits (103), Expect = 3e-05
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 270 VKILKKPEPTVGE-GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 446
+ ++ +P P V EV+++V G+ +DL + +G + P +LG E +G + VG
Sbjct: 60 LSVITRPVPHVSNPSEVIVKVAYSGICDRDLQILEGEL--PAAKCVVLGHEFSGVVSDVG 117
Query: 447 ENVTNFKVGDQVVALP 494
+V N +GD+VV P
Sbjct: 118 SDVKNVSIGDRVVVNP 133
>SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 549
Score = 42.7 bits (96), Expect = 2e-04
Identities = 22/60 (36%), Positives = 33/60 (55%)
Frame = +3
Query: 312 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 491
+VLI++ A ++ + +R G+ P+ PF G AG I +G+ VT KVGD V L
Sbjct: 289 QVLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIGDEVTKHKVGDHVYTL 348
>SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 348
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Frame = +3
Query: 270 VKILKKPEPTV-GEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 446
+ ++ +P P V +V++++ ++ DL V +G ID ILG + G ++++G
Sbjct: 12 LSVITRPTPHVQSPRDVVVKIAYSAVSGTDLHVLEGRIDCAKS--IILGHQFVGIVKEIG 69
Query: 447 ENVTNFKVGDQVVALP 494
+V + VGD+VV P
Sbjct: 70 ADVQHVSVGDRVVINP 85
>SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092)
Length = 676
Score = 35.1 bits (77), Expect = 0.049
Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +3
Query: 231 ARRSTYRLGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFIL 410
+R ST ++TV K EP G EVL++ + G+N D+ G K PF
Sbjct: 16 SRLSTNFREAVETVSA-KMLEP--GPEEVLVKTRYAGINATDINHTAGRYKPWNKPPFDA 72
Query: 411 GFECAGEIEQVGENVT-NFKVGDQVV 485
G E GE+ G++ F VG V+
Sbjct: 73 GLEGLGEVVATGKDYKGKFSVGQPVM 98
>SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 82
Score = 34.7 bits (76), Expect = 0.064
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +3
Query: 312 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFK 467
EV I++ A G+ D G +D P ILG E G +E VGE VT K
Sbjct: 30 EVRIKILATGVCHTDAYTLSG-VDPEGLFPCILGHEGGGIVESVGEGVTKVK 80
>SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13)
Length = 303
Score = 32.7 bits (71), Expect = 0.26
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 399 PFILGFECAGEIEQVGENVTNFKVGDQVVALP 494
P +LG E +G I VGE V++ K GD+V P
Sbjct: 52 PMVLGHESSGVICAVGEGVSDLKEGDRVAIEP 83
>SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044)
Length = 527
Score = 31.1 bits (67), Expect = 0.79
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Frame = +3
Query: 255 GGLKTVKILKKPE--PTVGEGEVLIRVKACGLN 347
GGLK LK+ P V EG V++++KACGL+
Sbjct: 301 GGLKGEYELKETFECPQVDEGSVVVKIKACGLD 333
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/34 (44%), Positives = 21/34 (61%)
Frame = -2
Query: 523 RHQLGQARYSGRATTWSPTLKLVTFSPTCSISPA 422
RH++GQ S ATT S T + V + T +ISP+
Sbjct: 368 RHKIGQPVLSVNATTSSSTYETVAVNTTTTISPS 401
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 308 GRGPDSRESLRPKLPRFDSSSGRHRLSTED 397
GRG D +R +LP DSS R S ED
Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDED 1084
>SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 282
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -2
Query: 394 FGGESMAP*RTIKSWKFRPQAFTRIRTSPSPT 299
FG + +P TIKSW ++PQ TR +P T
Sbjct: 74 FGIDGTSP-PTIKSWCYKPQTVTRSSKTPVKT 104
>SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 674
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 17/39 (43%)
Frame = +1
Query: 379 STLHRRLLSSWASNALVKSSKLAKMSPILRWATKWWLSP 495
S L +LL W + K ++ P RW WWL P
Sbjct: 240 SILGGKLLGIWIDLNVPKGVRITPFDP--RWMGAWWLGP 276
>SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6)
Length = 179
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 317 DLALTNGRLRFFEYLNGLETPKPVST 240
+LAL RLR+F ++ + P PVS+
Sbjct: 122 ELALRKARLRWFRHVERAQAPNPVSS 147
>SB_8959| Best HMM Match : PAN (HMM E-Value=0.013)
Length = 450
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Frame = -2
Query: 592 RGDGNSIQGRHSFGQRVHVLGRYRHQLGQAR-YSGRATTWSPTLKLVTFSP 443
+G GNS + + +R+ V R H+L +R Y + L +VT SP
Sbjct: 186 KGQGNSWKDKQQTKERIEVTDRQIHRLTDSRTYKSGGIPKTVFLNVVTHSP 236
>SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 323
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 53 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 83
>SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0)
Length = 1075
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 166 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 196
>SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 998
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 258 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 288
>SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1258
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 442 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 472
>SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021)
Length = 528
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 258 AATWSPTLATLTANPPRSLSKSCGVVNIQGL 288
>SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21)
Length = 870
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 258 AATWSPTLATLTANPPRSLSKSCGVVNIQGL 288
>SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 821
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -2
Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395
A TWSPTL +T +P S+S + ++G+
Sbjct: 542 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 572
>SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1017
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = +3
Query: 423 AGEIEQVGENVTNFKVGDQVVALPEYRAWPSWCLYRPSTCTRCPKEC 563
+GE G V DQ V +++ P CL + CT P++C
Sbjct: 874 SGEEGSSGSGSAPEPVRDQDVDWKQFKIKPEQCLDKGENCTGDPEQC 920
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,902,780
Number of Sequences: 59808
Number of extensions: 395828
Number of successful extensions: 1102
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1003
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1100
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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