BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0739 (638 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) 89 4e-18 SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) 55 6e-08 SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) 52 5e-07 SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05 SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04 SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002 SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) 35 0.049 SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.064 SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) 33 0.26 SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044) 31 0.79 SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4 SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 30 1.8 SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.2 SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.6 SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6) 28 7.4 SB_8959| Best HMM Match : PAN (HMM E-Value=0.013) 28 7.4 SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 9.7 SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) 27 9.7 SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 9.7 SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) 27 9.7 SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) 27 9.7 SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7 >SB_15549| Best HMM Match : ADH_zinc_N (HMM E-Value=9.4e-13) Length = 562 Score = 88.6 bits (210), Expect = 4e-18 Identities = 38/101 (37%), Positives = 57/101 (56%) Frame = +3 Query: 255 GGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 434 GG +K+ K P +G+V+++V ACG+ F DL+ RQG PK P++ GFEC+G + Sbjct: 48 GGNNKIKVEKYARPKPMQGQVVVKVHACGVTFADLLQRQGHFPLAPKPPYVCGFECSGVV 107 Query: 435 EQVGENVTNFKVGDQVVALPEYRAWPSWCLYRPSTCTRCPK 557 E++GE VT VG +V+ L Y W + C P+ Sbjct: 108 EELGEEVTGIDVGARVICLAPYGMWTEYACVDAKMCYVMPE 148 Score = 36.7 bits (81), Expect = 0.016 Identities = 16/42 (38%), Positives = 24/42 (57%) Frame = +2 Query: 512 ELVSVPAQYVYALPEGMSALDAVAITTNYVVAYLLLFEMANL 637 E V A+ Y +PE M+ + AI Y+ A+L+LF + NL Sbjct: 134 EYACVDAKMCYVMPEAMTFEEGAAIPITYLTAHLILFHLGNL 175 >SB_27978| Best HMM Match : HycH (HMM E-Value=0.12) Length = 316 Score = 54.8 bits (126), Expect = 6e-08 Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 1/102 (0%) Frame = +3 Query: 255 GGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEI 434 GG +++ I P P + E EVLIRV LN D + R+G+ PP ILG E +G + Sbjct: 36 GGPESMYIGDAPRPKLKETEVLIRVHFTALNRADTLQRKGSYPPPPGESEILGLEVSGIV 95 Query: 435 EQVGENVT-NFKVGDQVVALPEYRAWPSWCLYRPSTCTRCPK 557 E++G ++ GD+V+AL + + + S PK Sbjct: 96 EELGSACNLGWRKGDKVMALVPGGGYAEFAAVQESHVMPIPK 137 >SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30) Length = 796 Score = 51.6 bits (118), Expect = 5e-07 Identities = 27/76 (35%), Positives = 44/76 (57%), Gaps = 3/76 (3%) Frame = +3 Query: 315 VLIRVKACGLNFQDLIVRQGAIDSPPKT---PFILGFECAGEIEQVGENVTNFKVGDQVV 485 V+++ ACG+N+ D+ +R G +S K P GFE +G I+ GENVT F++G +V Sbjct: 40 VVVKTFACGVNYADICIRWGLYESAKKFVGWPITPGFEFSGVIQWKGENVTEFEIGQEVF 99 Query: 486 ALPEYRAWPSWCLYRP 533 + ++ S C+ P Sbjct: 100 GASLFGSY-SECIRVP 114 Score = 31.9 bits (69), Expect = 0.45 Identities = 14/42 (33%), Positives = 25/42 (59%) Frame = +2 Query: 509 AELVSVPAQYVYALPEGMSALDAVAITTNYVVAYLLLFEMAN 634 +E + VP ++ALP+ MS +A + T + A+ FE+A+ Sbjct: 108 SECIRVPKNQLFALPKKMSKNEAAGLPTVALTAWYAFFELAH 149 >SB_38647| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 395 Score = 45.6 bits (103), Expect = 3e-05 Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +3 Query: 270 VKILKKPEPTVGE-GEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 446 + ++ +P P V EV+++V G+ +DL + +G + P +LG E +G + VG Sbjct: 60 LSVITRPVPHVSNPSEVIVKVAYSGICDRDLQILEGEL--PAAKCVVLGHEFSGVVSDVG 117 Query: 447 ENVTNFKVGDQVVALP 494 +V N +GD+VV P Sbjct: 118 SDVKNVSIGDRVVVNP 133 >SB_43405| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 549 Score = 42.7 bits (96), Expect = 2e-04 Identities = 22/60 (36%), Positives = 33/60 (55%) Frame = +3 Query: 312 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFKVGDQVVAL 491 +VLI++ A ++ + +R G+ P+ PF G AG I +G+ VT KVGD V L Sbjct: 289 QVLIKLSAASVSPVETYIRSGSYARLPELPFTPGNYGAGIIHAIGDEVTKHKVGDHVYTL 348 >SB_37986| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 348 Score = 39.9 bits (89), Expect = 0.002 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 1/76 (1%) Frame = +3 Query: 270 VKILKKPEPTV-GEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVG 446 + ++ +P P V +V++++ ++ DL V +G ID ILG + G ++++G Sbjct: 12 LSVITRPTPHVQSPRDVVVKIAYSAVSGTDLHVLEGRIDCAKS--IILGHQFVGIVKEIG 69 Query: 447 ENVTNFKVGDQVVALP 494 +V + VGD+VV P Sbjct: 70 ADVQHVSVGDRVVINP 85 >SB_36205| Best HMM Match : ADH_zinc_N (HMM E-Value=0.00092) Length = 676 Score = 35.1 bits (77), Expect = 0.049 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 1/86 (1%) Frame = +3 Query: 231 ARRSTYRLGGLKTVKILKKPEPTVGEGEVLIRVKACGLNFQDLIVRQGAIDSPPKTPFIL 410 +R ST ++TV K EP G EVL++ + G+N D+ G K PF Sbjct: 16 SRLSTNFREAVETVSA-KMLEP--GPEEVLVKTRYAGINATDINHTAGRYKPWNKPPFDA 72 Query: 411 GFECAGEIEQVGENVT-NFKVGDQVV 485 G E GE+ G++ F VG V+ Sbjct: 73 GLEGLGEVVATGKDYKGKFSVGQPVM 98 >SB_12420| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 82 Score = 34.7 bits (76), Expect = 0.064 Identities = 21/52 (40%), Positives = 26/52 (50%) Frame = +3 Query: 312 EVLIRVKACGLNFQDLIVRQGAIDSPPKTPFILGFECAGEIEQVGENVTNFK 467 EV I++ A G+ D G +D P ILG E G +E VGE VT K Sbjct: 30 EVRIKILATGVCHTDAYTLSG-VDPEGLFPCILGHEGGGIVESVGEGVTKVK 80 >SB_19057| Best HMM Match : ADH_zinc_N (HMM E-Value=5.9e-13) Length = 303 Score = 32.7 bits (71), Expect = 0.26 Identities = 15/32 (46%), Positives = 20/32 (62%) Frame = +3 Query: 399 PFILGFECAGEIEQVGENVTNFKVGDQVVALP 494 P +LG E +G I VGE V++ K GD+V P Sbjct: 52 PMVLGHESSGVICAVGEGVSDLKEGDRVAIEP 83 >SB_50200| Best HMM Match : RVT_1 (HMM E-Value=0.044) Length = 527 Score = 31.1 bits (67), Expect = 0.79 Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 2/33 (6%) Frame = +3 Query: 255 GGLKTVKILKKPE--PTVGEGEVLIRVKACGLN 347 GGLK LK+ P V EG V++++KACGL+ Sbjct: 301 GGLKGEYELKETFECPQVDEGSVVVKIKACGLD 333 >SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 789 Score = 30.3 bits (65), Expect = 1.4 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 523 RHQLGQARYSGRATTWSPTLKLVTFSPTCSISPA 422 RH++GQ S ATT S T + V + T +ISP+ Sbjct: 368 RHKIGQPVLSVNATTSSSTYETVAVNTTTTISPS 401 >SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) Length = 1110 Score = 29.9 bits (64), Expect = 1.8 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +2 Query: 308 GRGPDSRESLRPKLPRFDSSSGRHRLSTED 397 GRG D +R +LP DSS R S ED Sbjct: 1055 GRGRDKGRQMRTRLPSIDSSRSMGRSSDED 1084 >SB_43329| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 282 Score = 29.1 bits (62), Expect = 3.2 Identities = 14/32 (43%), Positives = 19/32 (59%) Frame = -2 Query: 394 FGGESMAP*RTIKSWKFRPQAFTRIRTSPSPT 299 FG + +P TIKSW ++PQ TR +P T Sbjct: 74 FGIDGTSP-PTIKSWCYKPQTVTRSSKTPVKT 104 >SB_22525| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 674 Score = 28.3 bits (60), Expect = 5.6 Identities = 13/39 (33%), Positives = 17/39 (43%) Frame = +1 Query: 379 STLHRRLLSSWASNALVKSSKLAKMSPILRWATKWWLSP 495 S L +LL W + K ++ P RW WWL P Sbjct: 240 SILGGKLLGIWIDLNVPKGVRITPFDP--RWMGAWWLGP 276 >SB_42667| Best HMM Match : Ribosomal_S9 (HMM E-Value=4.6) Length = 179 Score = 27.9 bits (59), Expect = 7.4 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = -1 Query: 317 DLALTNGRLRFFEYLNGLETPKPVST 240 +LAL RLR+F ++ + P PVS+ Sbjct: 122 ELALRKARLRWFRHVERAQAPNPVSS 147 >SB_8959| Best HMM Match : PAN (HMM E-Value=0.013) Length = 450 Score = 27.9 bits (59), Expect = 7.4 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = -2 Query: 592 RGDGNSIQGRHSFGQRVHVLGRYRHQLGQAR-YSGRATTWSPTLKLVTFSP 443 +G GNS + + +R+ V R H+L +R Y + L +VT SP Sbjct: 186 KGQGNSWKDKQQTKERIEVTDRQIHRLTDSRTYKSGGIPKTVFLNVVTHSP 236 >SB_59531| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) Length = 323 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 53 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 83 >SB_52374| Best HMM Match : GATase_2 (HMM E-Value=0) Length = 1075 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 166 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 196 >SB_46870| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) Length = 998 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 258 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 288 >SB_38523| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1258 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 442 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 472 >SB_22197| Best HMM Match : zf-CCHC (HMM E-Value=0.00021) Length = 528 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 258 AATWSPTLATLTANPPRSLSKSCGVVNIQGL 288 >SB_16302| Best HMM Match : RVT_1 (HMM E-Value=1.6e-21) Length = 870 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 258 AATWSPTLATLTANPPRSLSKSCGVVNIQGL 288 >SB_14793| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 821 Score = 27.5 bits (58), Expect = 9.7 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = -2 Query: 487 ATTWSPTLKLVTFSPTCSISPAHSKPKMKGV 395 A TWSPTL +T +P S+S + ++G+ Sbjct: 542 AATWSPTLATLTANPPKSLSKSCGVVNIQGL 572 >SB_5869| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1017 Score = 27.5 bits (58), Expect = 9.7 Identities = 14/47 (29%), Positives = 21/47 (44%) Frame = +3 Query: 423 AGEIEQVGENVTNFKVGDQVVALPEYRAWPSWCLYRPSTCTRCPKEC 563 +GE G V DQ V +++ P CL + CT P++C Sbjct: 874 SGEEGSSGSGSAPEPVRDQDVDWKQFKIKPEQCLDKGENCTGDPEQC 920 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,902,780 Number of Sequences: 59808 Number of extensions: 395828 Number of successful extensions: 1102 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1003 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1100 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1608851125 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -