Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0737
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888...    28   5.5  
12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,731...    27   9.7  
01_07_0300 - 42606267-42606779,42606874-42606936                       27   9.7  

>06_01_1084 +
           8883301-8883515,8883736-8884063,8884764-8885022,
           8885581-8885681
          Length = 300

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +2

Query: 524 RRVTSIKNAFRPTHVIL*FPCRQTRPESHAKPSNVHTCLR 643
           R+   +KN  R    I+    R TRP S  +PS   +C R
Sbjct: 99  RKKEQMKNIMRTLKGIILAAARWTRPPSSTRPSGTSSCSR 138


>12_01_0798 + 7314885-7314953,7315324-7315387,7315489-7315677,
            7316430-7316625,7316727-7316953,7317177-7318134,
            7320104-7321307,7321517-7321876,7321965-7323195,
            7323334-7323599,7323738-7326335
          Length = 2453

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = +1

Query: 343  WGLVLDLTLLTSIRDSNQSPSCELYASLTTTRATEKYNILEISSNI-QSTLSTV--LVKC 513
            W L  +    +S+ D N SPS  +  +L   R+T+    +  ++NI  + L T+   V C
Sbjct: 2057 WELWYEPGTGSSVADDNNSPSSSITGTLVALRSTQMITTVLPNANITPNNLGTLDSAVSC 2116

Query: 514  LLKSS 528
             L  S
Sbjct: 2117 FLHLS 2121


>01_07_0300 - 42606267-42606779,42606874-42606936
          Length = 191

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = -1

Query: 631 MYIGRLSVRFWPRLPTRKLQYYVSW 557
           ++I R+ + ++PRLP R+  Y V++
Sbjct: 114 LFIARIVMSWYPRLPVREFPYVVAY 138


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,412,816
Number of Sequences: 37544
Number of extensions: 234287
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)