Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0737
         (646 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   3.3  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   3.3  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    21   7.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   7.7  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 397 SPSCELYASLTTTRATEKYNILEISSNIQ 483
           SP  E Y S ++T     YN L  + NI+
Sbjct: 524 SPHHEYYDSKSSTETPPSYNQLNYNENIE 552


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 174 KIYGIYELNPLDLM*FNFRTNKPN 245
           K YG+Y++   D++ +NF     N
Sbjct: 378 KFYGMYDILARDILGYNFDFQNKN 401


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +3

Query: 174 KIYGIYELNPLDLM*FNFRTNKPN 245
           K YG+Y++   D++ +NF     N
Sbjct: 378 KFYGMYDILARDILGYNFDFQNKN 401


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 6 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18 QRITYASWLKETVVQYNLEF 77
          Q +T  +WLK   V YNL++
Sbjct: 31 QILTTNAWLKLEWVDYNLQW 50


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 5 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18 QRITYASWLKETVVQYNLEF 77
          Q +T  +WLK   V YNL++
Sbjct: 31 QILTTNAWLKLEWVDYNLQW 50


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 4 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18 QRITYASWLKETVVQYNLEF 77
          Q +T  +WLK   V YNL++
Sbjct: 31 QILTTNAWLKLEWVDYNLQW 50


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18 QRITYASWLKETVVQYNLEF 77
          Q +T  +WLK   V YNL++
Sbjct: 31 QILTTNAWLKLEWVDYNLQW 50


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 2 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18 QRITYASWLKETVVQYNLEF 77
          Q +T  +WLK   V YNL++
Sbjct: 31 QILTTNAWLKLEWVDYNLQW 50


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic
          acetylcholine receptor subunitalpha 6 transcript
          variant 1 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18 QRITYASWLKETVVQYNLEF 77
          Q +T  +WLK   V YNL++
Sbjct: 31 QILTTNAWLKLEWVDYNLQW 50


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +1

Query: 100 WLGWINVLI 126
           WLGWIN  I
Sbjct: 346 WLGWINSAI 354


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18  QRITYASWLKETVVQYNLEF 77
           Q +T  +WLK   V YNL++
Sbjct: 99  QILTTNAWLKLEWVDYNLQW 118


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 18  QRITYASWLKETVVQYNLEF 77
           Q +T  +WLK   V YNL++
Sbjct: 99  QILTTNAWLKLEWVDYNLQW 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,289
Number of Sequences: 438
Number of extensions: 2770
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)