Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0736
         (617 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   2.2  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.2  

>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = +1

Query: 196 PIYYPT--YKNISYLFTNFVSVTFRLRLCGVKNSKN 297
           P+YY    YKN + +  N  +VT  + L   KNSKN
Sbjct: 204 PVYYEREPYKNSAAINVNTGTVTHFVALAPFKNSKN 239


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 191  AFQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQKT 298
            AF Y+    K+Y   S  ++ L S + C   KI K+
Sbjct: 926  AFTYVCNISKLYVYKSDATNSLASSIRCTADKISKS 961


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,509,845
Number of Sequences: 5004
Number of extensions: 49508
Number of successful extensions: 73
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)