Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0736
         (617 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M96982-1|AAA36619.1|  240|Homo sapiens U2 snRNP auxiliary factor...    30   7.5  
BC001923-1|AAH01923.1|  240|Homo sapiens U2 small nuclear RNA au...    30   7.5  
BC001177-1|AAH01177.1|  240|Homo sapiens U2 small nuclear RNA au...    30   7.5  
AP001748-2|BAA95534.1|  240|Homo sapiens U2 snRNP auxiliary fact...    30   7.5  
BC018437-1|AAH18437.1|  250|Homo sapiens SEC22 vesicle trafficki...    29   9.9  
BC006178-1|AAH06178.1|  303|Homo sapiens SEC22 vesicle trafficki...    29   9.9  
AY359041-1|AAQ89400.1|  228|Homo sapiens SEC22C protein.               29   9.9  
AF039568-1|AAD02171.1|  250|Homo sapiens vesicle trafficking pro...    29   9.9  

>M96982-1|AAA36619.1|  240|Homo sapiens U2 snRNP auxiliary factor
           small subunit protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 164 RTRRLLTTPAFQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQ 292
           R  RL   P F   I  + IY    Q SSQ   GL CAVS ++
Sbjct: 32  RCSRLHNKPTFSQTIALLNIYR-NPQNSSQSADGLRCAVSDVE 73


>BC001923-1|AAH01923.1|  240|Homo sapiens U2 small nuclear RNA
           auxiliary factor 1 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 164 RTRRLLTTPAFQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQ 292
           R  RL   P F   I  + IY    Q SSQ   GL CAVS ++
Sbjct: 32  RCSRLHNKPTFSQTIALLNIYR-NPQNSSQSADGLRCAVSDVE 73


>BC001177-1|AAH01177.1|  240|Homo sapiens U2 small nuclear RNA
           auxiliary factor 1 protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 164 RTRRLLTTPAFQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQ 292
           R  RL   P F   I  + IY    Q SSQ   GL CAVS ++
Sbjct: 32  RCSRLHNKPTFSQTIALLNIYR-NPQNSSQSADGLRCAVSDVE 73


>AP001748-2|BAA95534.1|  240|Homo sapiens U2 snRNP auxiliary factor
           small subunit protein.
          Length = 240

 Score = 29.9 bits (64), Expect = 7.5
 Identities = 18/43 (41%), Positives = 21/43 (48%)
 Frame = +2

Query: 164 RTRRLLTTPAFQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQ 292
           R  RL   P F   I  + IY    Q SSQ   GL CAVS ++
Sbjct: 32  RCSRLHNKPTFSQTIALLNIYR-NPQNSSQSADGLRCAVSDVE 73


>BC018437-1|AAH18437.1|  250|Homo sapiens SEC22 vesicle trafficking
           protein homolog C (S. cerevisiae) protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 30/42 (71%)
 Frame = +2

Query: 194 FQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQKTVRLKPTA 319
           F  IIQ++K +H ++ +SS   S ++C++ KIQ+ ++L+P A
Sbjct: 115 FDSIIQKVK-WH-FNYVSS---SQMECSLEKIQEELKLQPPA 151


>BC006178-1|AAH06178.1|  303|Homo sapiens SEC22 vesicle trafficking
           protein homolog C (S. cerevisiae) protein.
          Length = 303

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 30/42 (71%)
 Frame = +2

Query: 194 FQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQKTVRLKPTA 319
           F  IIQ++K +H ++ +SS   S ++C++ KIQ+ ++L+P A
Sbjct: 115 FDSIIQKVK-WH-FNYVSS---SQMECSLEKIQEELKLQPPA 151


>AY359041-1|AAQ89400.1|  228|Homo sapiens SEC22C protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 30/42 (71%)
 Frame = +2

Query: 194 FQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQKTVRLKPTA 319
           F  IIQ++K +H ++ +SS   S ++C++ KIQ+ ++L+P A
Sbjct: 115 FDSIIQKVK-WH-FNYVSS---SQMECSLEKIQEELKLQPPA 151


>AF039568-1|AAD02171.1|  250|Homo sapiens vesicle trafficking
           protein protein.
          Length = 250

 Score = 29.5 bits (63), Expect = 9.9
 Identities = 16/42 (38%), Positives = 30/42 (71%)
 Frame = +2

Query: 194 FQYIIQRIKIYHIYSQISSQLRSGLDCAVSKIQKTVRLKPTA 319
           F  IIQ++K +H ++ +SS   S ++C++ KIQ+ ++L+P A
Sbjct: 115 FDSIIQKVK-WH-FNYVSS---SQMECSLEKIQEELKLQPPA 151


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,905,817
Number of Sequences: 237096
Number of extensions: 1635011
Number of successful extensions: 1991
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1991
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6635341780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)