Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0735
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    28   0.49 
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    25   3.5  
SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|c...    25   3.5  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   4.6  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    25   6.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   6.1  
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    25   6.1  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    24   8.0  

>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 28.3 bits (60), Expect = 0.49
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = +3

Query: 66  WTIGSHWHGHYI**FIWT*AWYNQSNWYSAINIRDIKLRAWRSCTGYKWYWC 221
           W I SH++G      IW    YN      + +I D+ +RA        W+ C
Sbjct: 28  WVIASHYNGQV---GIWN---YNTQTLVRSFDINDVPIRACAFIARKNWFVC 73


>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = -1

Query: 400 VRTAASPATLCSGLIDTRITSELRDFCFLTNSLNESTVVEISFGSL 263
           VR + SP++   GL+ T + S LR+     + +  S ++E++F SL
Sbjct: 187 VRASGSPSSADLGLVLTSLISWLREIPL--DKVMASPLIELAFRSL 230


>SPAC4F10.19c |||zf-HIT protein Hit1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 154

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -2

Query: 213 TTCSRCNSSKPEA*CP*C 160
           TTCS CN S+ +  CP C
Sbjct: 2   TTCSICNESEIKYKCPKC 19


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = +3

Query: 48   NYSNRVWTIGSHWHGHY 98
            NY   +W+I  HWH  Y
Sbjct: 1470 NYLYSIWSIFVHWHRAY 1486


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1328

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 12  YWVGSEFWSWYSNY 53
           Y+ G + W WY NY
Sbjct: 533 YYRGCQSWGWYYNY 546


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 171 IKLRAWRSCTGYKWYWCDEYY 233
           +K+ A R    Y WYW D ++
Sbjct: 257 VKMDAHRVVRDYAWYWGDFFF 277


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +3

Query: 264 KLPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKPLHKVAGEAAVLTRE 407
           KL N IST  D  +  V+  K  +SE  + + + +   AG+A  L  E
Sbjct: 219 KLKNYISTKADEAQPSVEAVKGKASEKAKQAGEFVSDKAGDAKELVNE 266


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 261 TKLPNEISTTVDSFKEFVKKQKSLSSEVMRV 353
           +K  NE+      F+EF+K+ + L   V++V
Sbjct: 271 SKTLNELDAVQQFFQEFIKENEPLEPYVVKV 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,400,303
Number of Sequences: 5004
Number of extensions: 25258
Number of successful extensions: 89
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)