Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0735
         (412 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0761 - 22901121-22901917,22902111-22902707,22904282-229043...    29   1.9  
04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729           27   7.7  
03_06_0341 - 33261210-33261327,33261411-33262057,33262950-332630...    27   7.7  

>12_02_0761 -
           22901121-22901917,22902111-22902707,22904282-22904358,
           22906543-22907135,22907552-22908118,22908431-22908958,
           22909115-22909432,22910622-22910656,22910986-22911301
          Length = 1275

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +1

Query: 238 AKTEPPSKPSCQMRFQQQLIHSKNLSRNKS 327
           A   PPS PS    FQQQ +H+    R  S
Sbjct: 12  AVAAPPSSPSTAKAFQQQQLHTHGQHRGSS 41


>04_01_0285 - 3794628-3794801,3794935-3795090,3795232-3795729
          Length = 275

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = +1

Query: 211 GIGVTNTTDAKTEPPSKPSCQMRFQQQLIHSKNLSRNKSL*VLKLCECLSSH 366
           GI +   TDA  E    P C + + ++     N +R   L  L+L +C   H
Sbjct: 126 GIPMHARTDAAAENLIGPKCAVHYIEEYSRGGNYNRTHDLRRLRLRQCRWHH 177


>03_06_0341 -
           33261210-33261327,33261411-33262057,33262950-33263061,
           33263313-33264097,33264797-33264867,33266323-33266635
          Length = 681

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 220 VTNTTDAKTEPPSKPSCQMRFQQQLIHSKNLSR 318
           +T TT+     P +   Q++ Q  L+H++ LSR
Sbjct: 398 ITKTTNRGANYPMQQDAQVQNQNALLHAQQLSR 430


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,098,166
Number of Sequences: 37544
Number of extensions: 162933
Number of successful extensions: 502
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 502
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 730630428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)