Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0735
         (412 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)            37   0.007
SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)                29   1.5  
SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   3.4  
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)                     27   6.0  
SB_45572| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.08)             27   6.0  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    27   6.0  
SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)                     27   7.9  

>SB_44024| Best HMM Match : Flavin_Reduct (HMM E-Value=0.79)
          Length = 308

 Score = 36.7 bits (81), Expect = 0.007
 Identities = 15/41 (36%), Positives = 26/41 (63%)
 Frame = +3

Query: 255 KQTKLPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKPLHKV 377
           K + LP++++  V+  K++VK+QK    E+ R S   +HKV
Sbjct: 234 KDSPLPDKLNEIVEHIKKYVKEQKEHRDEISRYSASTMHKV 274


>SB_28360| Best HMM Match : Phosphodiest (HMM E-Value=0)
          Length = 483

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 24  SEFWSWYSNYSNRVWTIGSH 83
           SE + WYS Y    WT G+H
Sbjct: 342 SERYEWYSKYHEGTWTRGNH 361


>SB_1079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 131

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
 Frame = +3

Query: 9  NYWVGSEFWSWYSNY-SNRVWTIGSHWHGH 95
          N W     WS Y N+ S+  W+I ++W  H
Sbjct: 4  NNWSAYHNWSTYENWSSHNNWSIHNNWSTH 33


>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
          Length = 3489

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 11/32 (34%), Positives = 22/32 (68%)
 Frame = +3

Query: 255  KQTKLPNEISTTVDSFKEFVKKQKSLSSEVMR 350
            ++T+  NE+++ ++S  + VKK +  SS VM+
Sbjct: 2392 RETEEKNELTSQIESLVDKVKKYEEASSTVMK 2423


>SB_45572| Best HMM Match : Seryl_tRNA_N (HMM E-Value=0.08)
          Length = 813

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 209 LVAGATPPSPKLDVPNVDG*VPVRLVV 129
           LV G  PPS  LD+       P+RLV+
Sbjct: 198 LVTGHAPPSSLLDLRRASDPAPIRLVI 224


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 9   NYWVGSEFWSWYSNYSNRVWTIGSHW-HGHYI**FIWT--*AWYNQSNW 146
           N W     WS Y+++S+  W+  ++W H ++     W+    W   +NW
Sbjct: 28  NNWSTHNNWSTYNDWSHNNWSTYNNWSHNNWSTYNNWSTYNNWSTYNNW 76


>SB_27494| Best HMM Match : MFAP1_C (HMM E-Value=0)
          Length = 808

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +3

Query: 9   NYWVGSEFWSWYSNYSNRVWTIGSHWHGHYI**FIWT*AWYNQSNWYS 152
           +++ GS++ S Y  +S   W  GS W   Y   ++    W + S+W S
Sbjct: 726 DWFSGSDWVSGYDWFSGSDWVSGSDWVSGYD--WVSGSDWVSGSDWVS 771


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,486,503
Number of Sequences: 59808
Number of extensions: 203602
Number of successful extensions: 515
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 481
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)