Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0735
         (412 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27000.1 68418.m03221 kinesin motor protein-related non-conse...    28   2.1  
At2g26590.1 68415.m03190 adhesion regulating molecule family sim...    27   3.7  
At2g38550.1 68415.m04736 expressed protein contains Pfam profile...    27   4.9  
At1g48290.1 68414.m05394 expressed protein ; expression supporte...    27   6.5  
At5g48510.1 68418.m05998 speckle-type POZ protein-related contai...    26   8.6  
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi...    26   8.6  

>At5g27000.1 68418.m03221 kinesin motor protein-related
           non-consensus AT donor splice site at exon 12;
           non-consensus AC acceptor splice site at exon 13
          Length = 987

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 255 KQTKLPNEISTTVDSFKEFVKKQKSLSSEVMRVSIKPL 368
           K   +PN + + ++   E V+++ S+ +E+M+ S KP+
Sbjct: 237 KHEDIPNVVESVLNKVMEEVQQRLSIHNEMMKSSSKPI 274


>At2g26590.1 68415.m03190 adhesion regulating molecule family
           similar to oocyte membrane protein (GI:6174842) [Xenopus
           laevis]; similar to Adhesion regulating molecule 1
           precursor (110 kDa cell membrane glycoprotein) (Gp110)
           (Swiss-Prot:Q16186) [Homo sapiens]; contains Pfam
           PF04683: Adhesion regulating molecule conserved region
          Length = 300

 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 410 RLARQDRRLARHLMQWLDRHSHNFRTQRLLFLDK-FFE*IN 291
           R+AR D  L     QWLDR+ +     +++F D+  FE +N
Sbjct: 39  RIARGDEGLIH--FQWLDRNQNTVEDDQIVFPDEALFEKVN 77


>At2g38550.1 68415.m04736 expressed protein contains Pfam profile
           PF03647: Uncharacterised protein family (UPF0136)
          Length = 335

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 288 TVDSFKEFVKKQKSLSSEVMRVSIKPLHKVAGEAA 392
           T++SFKE V K +S+SSE   V+ +    V  E +
Sbjct: 109 TLESFKEQVSKMQSVSSEAYSVNSQKAMTVLKETS 143


>At1g48290.1 68414.m05394 expressed protein ; expression supported
           by MPSS
          Length = 444

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -3

Query: 404 ARQDRRLARHLMQWLDRHSHNFRTQRLLF 318
           A + R+ A+H+M    R+SH+   QRL +
Sbjct: 175 AAEHRQCAKHIMDNWKRNSHDMELQRLFW 203


>At5g48510.1 68418.m05998 speckle-type POZ protein-related contains
           Pfam PF00651 : BTB/POZ domain; similar to Speckle-type
           POZ protein (SP:O43791) [Homo sapiens]
          Length = 224

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = +3

Query: 267 LPNEISTTV--DSFKEFVKKQKSLSSEVMRVSI 359
           + N IST    D FK FV    +L+ E+M+VS+
Sbjct: 159 IKNNISTIASSDEFKLFVAGNPNLAVEIMKVSL 191


>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
           PF00010 helix-loop-helix DNA-binding domain
          Length = 478

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = -3

Query: 218 PIPL-VAGATP--PSPKLDVPNVDG*VPVRLVVPSLGPN 111
           P+P  +AG  P  P+P+   PN+    P R+ +PS  PN
Sbjct: 390 PMPAQMAGVGPSYPAPRYPFPNIQTFDPSRVRLPSPQPN 428


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,315,688
Number of Sequences: 28952
Number of extensions: 131700
Number of successful extensions: 390
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)