Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0734
         (672 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    27   0.11 
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   6.9  

>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 0.11
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 287 IFVIVLSMYCKILITMSTIYVYVKFIL 207
           IF I L  YC ++I +   Y Y  FIL
Sbjct: 221 IFTIHLLFYCVLIILLCIYYFYYAFIL 247



 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 544 LINISAIIMILWFFLCN*LIYCCF 473
           L+ I   ++ L+F LC    YC F
Sbjct: 130 LLCIYYFVVPLFFLLCIYYFYCAF 153


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +3

Query: 180 LNLIDTLFH*NELNVDVNCAHCDENFTIHTQHNHENLLIYLNFPFHSYYLF 332
           L+++   +H  ++NV  +    +  F  H     +N +IY N  F    LF
Sbjct: 111 LHVVKQCYHLQKINVQQSGIFINLPFLEHNLIRLKNCVIYFNRIFGWNILF 161


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,884
Number of Sequences: 336
Number of extensions: 3060
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)