Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0734
         (672 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0121 - 10987553-10987648,10990674-10991398,10991452-109918...    31   0.63 
02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    29   2.6  
11_05_0063 - 18756289-18756390,18756769-18756954,18757053-187572...    29   3.4  
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921...    28   5.9  

>10_06_0121 -
           10987553-10987648,10990674-10991398,10991452-10991848,
           10993613-10993633
          Length = 412

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 183 NLIDTLFH*NELNVDVNCAHCDENFTIHTQHNHE 284
           NL+ T  H   ++VD++C   D++ + H  HN+E
Sbjct: 351 NLLSTTQHGAHIDVDISCDLLDDSASCHIPHNNE 384


>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +2

Query: 416 SRKSLHYFKSITNSLLMA-FEATVNQLVTQEKPQNHYYCRYIYQL 547
           S +S +YF  I +SL+ + F+AT  + V    PQ HY  + +Y L
Sbjct: 166 SFRSFYYFDMIVSSLVTSTFQATYLESVKSRHPQLHYESK-LYML 209


>11_05_0063 -
           18756289-18756390,18756769-18756954,18757053-18757223,
           18757339-18757383,18758087-18758260,18758801-18758887,
           18759349-18759510,18759945-18760015,18760296-18760435,
           18760828-18760952,18761329-18761463,18762069-18762314,
           18762530-18762755,18763039-18763091
          Length = 640

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -3

Query: 574 FTGEEFKRKKLINISAIIMILWFFLC 497
           FTG+E K + L+N+   +++ W F C
Sbjct: 601 FTGKEIKGELLVNLPDTLLLNWLFHC 626


>12_02_0792 -
           23191120-23191313,23191419-23191775,23192027-23192108,
           23192186-23193097,23193190-23193346,23193540-23193694,
           23194667-23194819,23195334-23195627,23195711-23195896,
           23196062-23196662,23196868-23196992,23197101-23197197,
           23197299-23197411,23198129-23198233
          Length = 1176

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +2

Query: 404 NFRFSRKSLHYFKSITNSLLMAFEATVNQLVTQEKPQNHYYCRYIYQLFSFKLFSGKPTN 583
           + RFSRK L YF S+ + +        + ++   KP N      + Q  SF +   K  +
Sbjct: 611 SLRFSRKLLVYFASLDSYVHAELHGASSTIIKNHKPDNPIPPLTLNQAGSFTVCHSKAWD 670

Query: 584 LKL 592
            K+
Sbjct: 671 SKI 673


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,370,887
Number of Sequences: 37544
Number of extensions: 216609
Number of successful extensions: 335
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)