Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0734
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosenso...    27   9.2  
AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosenso...    27   9.2  
AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensor...    27   9.2  
AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensor...    27   9.2  
AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensor...    27   9.2  
AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensor...    27   9.2  
AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensor...    27   9.2  

>AF067945-11|AAV28330.1| 1604|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform g protein.
          Length = 1604

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 981  RELTQACLQPFDTTYETSCSAEKPQQYYY 1009


>AF067945-10|AAV28329.1| 1818|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform f protein.
          Length = 1818

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 1195 RELTQACLQPFDTTYETSCSAEKPQQYYY 1223


>AF067945-9|AAV28328.1| 1954|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform e protein.
          Length = 1954

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 1331 RELTQACLQPFDTTYETSCSAEKPQQYYY 1359


>AF067945-5|AAV28325.1| 1685|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform b protein.
          Length = 1685

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 1380 RELTQACLQPFDTTYETSCSAEKPQQYYY 1408


>AF067945-4|AAV28327.1| 1995|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform d protein.
          Length = 1995

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 1372 RELTQACLQPFDTTYETSCSAEKPQQYYY 1400


>AF067945-3|AAV28331.1| 2006|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform h protein.
          Length = 2006

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 1383 RELTQACLQPFDTTYETSCSAEKPQQYYY 1411


>AF067945-2|AAV28324.1| 2007|Caenorhabditis elegans Mechanosensory
            abnormality protein1, isoform a protein.
          Length = 2007

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 440  KSITNSLLMAFEATVNQLVTQEKPQNHYY 526
            + +T + L  F+ T     + EKPQ +YY
Sbjct: 1384 RELTQACLQPFDTTYETSCSAEKPQQYYY 1412


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,239,817
Number of Sequences: 27780
Number of extensions: 251126
Number of successful extensions: 534
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)