Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0733
(694 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 31 0.16
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 29 0.64
SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces pomb... 29 0.64
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 27 1.9
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 27 2.6
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 27 2.6
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy... 27 2.6
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 27 3.4
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 27 3.4
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc... 27 3.4
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.5
SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomy... 26 4.5
SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.5
SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8 |Schizo... 26 4.5
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 26 5.9
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 25 7.9
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 25 7.9
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 31.1 bits (67), Expect = 0.16
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +2
Query: 398 ETRNSPLKTMTNSPKSQRLTLTPKTSQETPKI 493
ET +SP T+++SP + + L+P +Q+ PKI
Sbjct: 600 ETDSSPSDTISSSPTVRAVNLSPSKNQKPPKI 631
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 29.1 bits (62), Expect = 0.64
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +1
Query: 418 KNHDKLTKIPEINSHSENFTRNTKNQTYASPPKVRSPLSYEIAENILDRPSPLTSRSLRG 597
KN+ L + +S +N T T+N + S VR P +Y + + + +PL +
Sbjct: 320 KNYLGLNVVQNDDSRKKNSTLQTQNMRFKSSYGVRGPRNYSSFDALPSKNAPLVRQEQSA 379
Query: 598 TLK 606
+ K
Sbjct: 380 SKK 382
>SPAC13C5.07 |rad32|mre11|Rad32 nuclease|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 649
Score = 29.1 bits (62), Expect = 0.64
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 299 SKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQ 478
+KR+ ++ + + IN +P+++ S +SPL T ++S T +P +
Sbjct: 518 TKRKDYEELPEEVSETSINIAEHTPVLKHTSSLLDHHSPLAT-SSSEHEMEATPSPALLK 576
Query: 479 ETPKIRHTP 505
+T K R P
Sbjct: 577 KTNKRRELP 585
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 27.5 bits (58), Expect = 1.9
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +2
Query: 434 SPKSQRLTLTPKTSQETPKIRHTPVHPK*DHRYHMK*LRTFWIGLHPLLV 583
S RL+LTP ++ TP + P + K L+ FW+ + L +
Sbjct: 407 SVAKDRLSLTPSSTPSTPSPAESLPQPSNPTSVYAKSLKEFWLDKYRLSI 456
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -2
Query: 480 SCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRGEVGL 358
S E++GV ++ W F E + RG + S D +S +G GL
Sbjct: 335 SGEIYGVLLHRWCFLEIFIKLRGAY-PSNDSGISGKGIFGL 374
>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 565
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/86 (20%), Positives = 36/86 (41%), Gaps = 2/86 (2%)
Frame = +1
Query: 361 TYFTSDRKIKVTRDQKLTSKNHDKLTKI--PEINSHSENFTRNTKNQTYASPPKVRSPLS 534
++ T+ +++ K T + D ++ P N SEN K T + P+
Sbjct: 288 SFSTTMASADASKETKQTHETKDSKSEESKPSNNEKSENAVEPAKGNTMSFSWTPDKPIK 347
Query: 535 YEIAENILDRPSPLTSRSLRGTLKIK 612
++ E +PL+S+ L + +K
Sbjct: 348 FDTPEKKFTFTNPLSSKKLPASSDVK 373
>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 270
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -3
Query: 443 ILVSLSWFLEVSFWSLVTLIFLSE 372
+L+ W L V FW++V IF+ E
Sbjct: 69 LLIGAVWGLNVGFWTVVCGIFIGE 92
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 26.6 bits (56), Expect = 3.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Frame = +1
Query: 487 KNQTYASPPKVRSPLSYEIAENILDRPSPLTSRSLRGTLKIKEVLE 624
+NQ++ SPP+V S Y+ + + P + S+ + +I+ + E
Sbjct: 605 ENQSHISPPQVDSQSEYKESSILAPSNPPFETESITDSTEIEGIKE 650
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 26.6 bits (56), Expect = 3.4
Identities = 9/16 (56%), Positives = 14/16 (87%)
Frame = -1
Query: 220 LRFVALLPEFILKFSV 173
L++ ALLPE++ KFS+
Sbjct: 236 LKYAALLPEYVAKFSI 251
>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 791
Score = 26.6 bits (56), Expect = 3.4
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 2/89 (2%)
Frame = +1
Query: 355 LQTYFTSDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFT--RNTKNQTYASPPKVRSP 528
LQ YFT+ + ++Q SKN D KI + H F+ + K + S +R+
Sbjct: 371 LQRYFTALEMQQDQKEQHKKSKNKDPFRKITHPSLHLGKFSTPKLIKRMSLRSKKSLRND 430
Query: 529 LSYEIAENILDRPSPLTSRSLRGTLKIKE 615
+ N R S ++ S KE
Sbjct: 431 SKSDDVGNSTHRFSTASAASTSAVKTEKE 459
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 347 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 484
P + KP++ + + E RN+ + NSP S + + K++ T
Sbjct: 129 PTDNKPSASTSTAVPTTEARNTSITEPANSPSSSSSSASTKSTATT 174
>SPBP16F5.08c |||flavin dependent monooxygenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +2
Query: 308 RILSDIQNSILSSPINYKPTSPLIERLKSPETR 406
++LS+I I + Y P + +LKSPET+
Sbjct: 276 KVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK 308
>SPBP8B7.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 325 TKLYTQLTN*LQTYFTSDRKIKVTRDQKLTSKNHDKLTKI 444
TK YT + + L T+ D + T +KLTSK +L K+
Sbjct: 210 TKNYTHIFDSLLTFTRHDSEDVSTSVEKLTSKKISELEKL 249
>SPCC24B10.07 |gad8||serine/threonine protein kinase Gad8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 569
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Frame = +1
Query: 406 KLTSK-NHDKLTKIPEINSHSENFTRNTKNQTYASPPKVRSPLSYEIAENILDRPSPLTS 582
KLT K L +NS +FTR KN T +S R + ++ D+ SP ++
Sbjct: 4 KLTKKLKETHLASAIGLNSGGSSFTRGLKNSTLSSTSS-RKSSDEKSRKSSEDKRSPQST 62
Query: 583 RSLRGTLKIKEVLEDRS 633
G L++ ++E R+
Sbjct: 63 VVQPGLLQV-TIIEARN 78
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 25.8 bits (54), Expect = 5.9
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 6/76 (7%)
Frame = +2
Query: 302 KRRILSDIQNSILSSPINYKPTSP------LIERLKSPETRNSPLKTMTNSPKSQRLTLT 463
K LS +S + SP +YK ++ + + NSPL+T SP Q+ T
Sbjct: 44 KNSFLSRKNSSQIKSPSDYKSSAHEQRVNHTTDSMAHVPGNNSPLQTPQKSPPRQKHT-A 102
Query: 464 PKTSQETPKIRHTPVH 511
P T RH H
Sbjct: 103 PATPIPVSASRHHKPH 118
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 392 SPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRH-TPVHP 514
+PE NS L SP + S + P H TP+HP
Sbjct: 269 NPELSNSNLLAKNESPADVSNNESGNESSKEPDKEHSTPIHP 310
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +1
Query: 421 NHDKLTKIPEINSHSENFTRNTKNQTYASPPKVRSPLSYEIAEN--ILDRPSPLTSRSLR 594
NH+ + + + NS +++ + + P V SP+S +++ + L PS + S LR
Sbjct: 94 NHNWSSDLQQANSPVASYSSQSVSNDSNFPKDVTSPISTDLSGSNPSLKSPSSINSAKLR 153
Query: 595 GT 600
+
Sbjct: 154 AS 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,867,350
Number of Sequences: 5004
Number of extensions: 60472
Number of successful extensions: 241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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