Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0733
(694 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,850... 34 0.093
08_01_0071 - 507595-507762,508027-508155,508567-508752,509306-50... 29 2.6
06_01_0606 - 4382133-4382704,4383017-4383336,4384152-4384258,438... 29 3.5
05_05_0276 + 23771233-23771268,23773552-23773897,23774425-237745... 29 3.5
07_01_0136 - 992662-992821,992879-993051 29 4.6
07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-57... 29 4.6
08_01_1036 + 10520727-10521117,10521301-10521479,10521603-105225... 28 6.1
06_03_0038 - 15778446-15778577,15778685-15779020,15779106-157792... 28 6.1
04_03_0904 + 20717005-20718087 28 6.1
11_02_0032 + 7564153-7564719,7564844-7565128,7565207-7565524,756... 28 8.1
01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411 28 8.1
>08_01_0871 + 8502396-8502417,8503606-8503732,8503891-8503990,
8504725-8504793,8504870-8505043,8505196-8505373,
8505462-8505594,8505702-8505864,8507031-8507181,
8507266-8507366,8507633-8507788,8508105-8508173,
8508256-8508324,8508403-8508540,8508639-8508767,
8509013-8509053,8510019-8510106,8510199-8510339,
8510428-8510553,8510671-8510736,8510994-8511291,
8511387-8511595,8511689-8511802
Length = 953
Score = 34.3 bits (75), Expect = 0.093
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 251 KEMYPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMT 430
K++YP S + D S PSK + + S P + K S L E+ K E + TMT
Sbjct: 811 KKLYPKSATPDSSSAPSKSSATASLTGS-FDRPKSVKDGSEL-EKPKQEEDAKEGINTMT 868
Query: 431 NSPKSQRLTLTPKTSQETPK-IRHTPVHP 514
+ +S LT+ + P+ PV+P
Sbjct: 869 SRVES--LTINEDVKENEPEDDEGLPVYP 895
>08_01_0071 -
507595-507762,508027-508155,508567-508752,509306-509381,
509477-509559,509778-509885,510420-510497,511762-511827
Length = 297
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Frame = +1
Query: 469 NFTRNTKNQTYASPPKVRSPLSYEIAENILDRPSPLTSRSLRGTLKIKEV-LEDRSWYKR 645
N + NT+N SPP S L E LD PS + GT K++ V ED WY
Sbjct: 61 NQSGNTQNDVGLSPPNYSSGLQSE----ALDDPSQSHEKFAVGT-KVQAVWSEDGEWYNA 115
Query: 646 SNKENCE 666
+ +E E
Sbjct: 116 TIEELTE 122
>06_01_0606 -
4382133-4382704,4383017-4383336,4384152-4384258,
4384339-4384512,4384956-4385204,4386831-4386986
Length = 525
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +1
Query: 493 QTYASPPKVRSPLSYEIAENILDRPSPLTSRSLRGTLKIKEVLEDR 630
Q A PP P ++ N+LD PSPL R LR + + ++++ R
Sbjct: 38 QMPAPPPPPPPPQQQDMYHNVLDEPSPLGLR-LRKSPSLLDLIQMR 82
>05_05_0276 +
23771233-23771268,23773552-23773897,23774425-23774541,
23774712-23774810,23774949-23775016,23775107-23775181,
23775386-23775931,23776040-23776092,23776163-23776204,
23776314-23776458,23776541-23776651,23777496-23777921,
23778116-23778373
Length = 773
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/46 (28%), Positives = 27/46 (58%)
Frame = +2
Query: 347 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 484
P+N +P +I++ P+ + S ++ P+S ++ +PK+SQ T
Sbjct: 267 PLNPRPREQVIQQNHEPQAQKSVRLQSSSGPESHKVQ-SPKSSQRT 311
>07_01_0136 - 992662-992821,992879-993051
Length = 110
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +3
Query: 168 LITENFRINSGNNATKRKQEEAFSHNYKKRCTPTRLASTKV 290
LI + + +NAT+ EAFS + RC+P S+ +
Sbjct: 14 LILQAIHLVQSSNATQFPSNEAFSTKHPPRCSPASTISSSL 54
>07_01_0077 + 566895-567127,567207-567331,571204-571340,571437-571542,
571635-571885,572018-572128,572209-572320,572626-572716,
573168-573507,573678-573900,573946-574204,574274-574481,
574572-574622,574712-574870,574956-575120,575322-575399,
575732-576031,576107-576259,576871-576918,577019-577188,
577738-577852,578462-578623,578789-578893,578969-579199,
579277-579410,579484-579738,579822-580110,580214-580306,
580395-580520,580646-580897
Length = 1693
Score = 28.7 bits (61), Expect = 4.6
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 495 LIFGVSCEVFGVRVNLWDFGEFVMVFRGEFLVSGDFNLSIRG 370
L+ ++ N DF + + + + E+L+ DF+L +RG
Sbjct: 1156 LLLRYGSQLMAASENQLDFPKIISLLKKEYLLKDDFSLKVRG 1197
>08_01_1036 +
10520727-10521117,10521301-10521479,10521603-10522593,
10522613-10522656
Length = 534
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Frame = +2
Query: 296 PSKRRILSDIQNSILSSPI---NYKPTSPLIERLKSPETR--NSPLKTMTNSPKSQRLTL 460
P+ R +++D+Q SI + P +PT+P L +P P + + +P +Q++ +
Sbjct: 146 PNYRSLITDVQPSIQAVPSVAPTTQPTTPTSTPLPAPSAMAPGQPQQPIQQTPPTQQV-V 204
Query: 461 TPKTSQETPKIRHTP 505
P Q ++ TP
Sbjct: 205 QPIQQQVMQPVQQTP 219
>06_03_0038 -
15778446-15778577,15778685-15779020,15779106-15779225,
15779280-15779765,15779861-15779994,15780111-15780230,
15784881-15785018,15785404-15786079,15786179-15786340,
15786424-15786618,15786839-15787084,15787758-15787952
Length = 979
Score = 28.3 bits (60), Expect = 6.1
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 368 SPLIERLKSPETRNSPLKTMTNSPKSQRL-TLTPKTS-QETPKIRHTPVHP 514
SP E + N+P + TNSP Q +TP + TP+I T HP
Sbjct: 400 SPTSEEAQDHHIHNTPDISPTNSPPPQPCRIITPDAAFNPTPQITSTEPHP 450
>04_03_0904 + 20717005-20718087
Length = 360
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 347 PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHTP 505
P YKP P + P+ + +P T PK TP T + PK TP
Sbjct: 239 PPTYKPAPPTYK----PQPKPNPPPTYKPQPKPTPTPYTPPTYKPQPKPTPTP 287
>11_02_0032 +
7564153-7564719,7564844-7565128,7565207-7565524,
7565612-7565839,7566662-7566762,7566852-7566933,
7567230-7567364,7567460-7567516,7568030-7568167
Length = 636
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +3
Query: 177 ENFRINSGNNATKRKQEEAFSHNYKKRCTPTRLASTKVLAP 299
EN RIN GN + + K+ S N + P LA T+V +P
Sbjct: 513 ENVRINRGNGSIQPKKHTYISGNLHPQGDPRTLA-TRVRSP 552
>01_01_0639 + 4825703-4826155,4826344-4826559,4826683-4827411
Length = 465
Score = 27.9 bits (59), Expect = 8.1
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = +2
Query: 329 NSILSS--PINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHT 502
NS+ S P + P +P R+ +P R+ P K + P T+Q TP++ H
Sbjct: 294 NSVSSPLLPFHQLPGAP--PRISAPSARHFPEYDWCPLEKPR-----PATAQSTPRLAHM 346
Query: 503 PVHP 514
PV P
Sbjct: 347 PVTP 350
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,567,204
Number of Sequences: 37544
Number of extensions: 354158
Number of successful extensions: 1061
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1024
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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