Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0733
(694 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.38
SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013) 31 0.67
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046) 31 0.89
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.89
SB_24123| Best HMM Match : RCSD (HMM E-Value=3.8) 31 0.89
SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17) 31 1.2
SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30) 31 1.2
SB_47342| Best HMM Match : VWA (HMM E-Value=0) 30 1.5
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_22927| Best HMM Match : SerH (HMM E-Value=1.1) 30 1.5
SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081) 30 1.5
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12) 30 2.0
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24) 30 2.0
SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41) 30 2.0
SB_25422| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0) 29 3.6
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07) 29 3.6
SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2) 29 4.7
SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83) 29 4.7
SB_29436| Best HMM Match : PAN (HMM E-Value=0.021) 29 4.7
SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5) 29 4.7
SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19) 28 6.2
SB_58772| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35) 28 6.2
SB_2821| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45) 28 8.3
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08) 28 8.3
SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_25665| Best HMM Match : TolA (HMM E-Value=1.7) 28 8.3
>SB_39471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 167
Score = 32.3 bits (70), Expect = 0.38
Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Frame = +2
Query: 284 QSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSP--ETRNSPLKTMTNSPKSQRLT 457
Q+ P ++ + I N ++PIN + +P+I++ +P E N+PL N+P Q+
Sbjct: 12 QANNPINQQASNPI-NQQANNPINQQANNPMIQQANNPLTEQANNPLTQEANNPTGQQPN 70
Query: 458 LTPKTSQETPKIRHTPVHP 514
P Q T P P
Sbjct: 71 -QPTGQQPTDPTGQQPNDP 88
>SB_26471| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 566
Score = 32.3 bits (70), Expect = 0.38
Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = -2
Query: 489 FGVSCEVFGVRVNLWDFGEFVMVFRGEF--LVSGDFNLSIRGEVGL*LIGELSIEFC--M 322
+G F ++ W +GE F GEF G+ + S+ GE+ L GELS F +
Sbjct: 65 YGEFSSWFYGEISSWFYGELSFWFYGEFSSWFYGELSSSLSGELSSWLYGELSSWFYGEL 124
Query: 321 SERILRFEGPGLWSKLSEWGY 259
S L+ +LS W Y
Sbjct: 125 SSWFYGELSSWLYGELSSWFY 145
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 489 FGVSCEVFGVRVNLWDFGEFVMVFRGEF--LVSGDFNLSIRGEVGL*LIGELS 337
+G F ++ W +GE F GEF G+ + S+ GE+ L GELS
Sbjct: 161 YGEFSSWFYGEISSWFYGELSFWFYGEFSSWFYGELSSSLSGELSSWLYGELS 213
Score = 28.7 bits (61), Expect = 4.7
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 5/82 (6%)
Frame = -2
Query: 489 FGVSCEVFGVRVNLWDFGEFVMVFRGEF--LVSGDFNLSIRGEVGL*LIGELSIEFCMSE 316
+G F ++ W +GE F GEF G+ + S+ GE+ GELS + E
Sbjct: 407 YGEFSSWFYGEISSWFYGELSFWFYGEFSSWFYGELSSSLSGELSSWFYGELS-SWLYGE 465
Query: 315 RILRFEG---PGLWSKLSEWGY 259
F G L +LS W Y
Sbjct: 466 LSSWFYGELSSSLSGELSSWLY 487
>SB_6095| Best HMM Match : 7tm_1 (HMM E-Value=0.013)
Length = 872
Score = 31.5 bits (68), Expect = 0.67
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 288 LWSKLSEWGYISFC--SCARMLLPVYVLLRCYR 196
LW+K S WGYI+ A +LLP+ V +CY+
Sbjct: 273 LWTKSSSWGYIALACKKDACVLLPLAVQGQCYQ 305
>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
Length = 797
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +2
Query: 350 INYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTS---QETPKIRHTPVHP 514
+++ P +PL SP R+SP +T + S R+ +P+TS TP++ H+P P
Sbjct: 649 VHHSPRTPL-PAYTSPRVRHSP-RTPVPAYTSPRVHQSPRTSLPAYSTPRVLHSPRTP 704
Score = 27.9 bits (59), Expect = 8.3
Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 350 INYKPTSPLIERLKSPETRNSPLKTMT--NSPKSQRLTLTPKTSQETPKIRHTPVHP 514
+++ P +P + +P +SP + SP+ TP + TP++ H+P P
Sbjct: 544 VHHSPRTP-VPAYTTPRVHHSPRTPLPAYTSPRVHHSPRTPVPAYTTPRVLHSPRTP 599
>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 862
Score = 31.1 bits (67), Expect = 0.89
Identities = 21/53 (39%), Positives = 30/53 (56%)
Frame = +2
Query: 296 PSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRL 454
PS I+ D S SSP N + SP++ RL E+R+S L+ ++ SP RL
Sbjct: 50 PSDDCIIFDDSFSSCSSPENKQLYSPVVARLLD-ESRSSELEELSYSPVVARL 101
>SB_41443| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 482
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 338 LSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRL-TLTPKTSQETPKIRHTPVHP 514
L +P+ P + S ++ SPL+ + S + T TPK+S +TP TP P
Sbjct: 16 LDAPLAKGPAPRWQRKASSGRSQTSPLRNSSRLNTSTKTPTKTPKSSNKTPLTAKTPKTP 75
Query: 515 K*D 523
D
Sbjct: 76 SED 78
>SB_24123| Best HMM Match : RCSD (HMM E-Value=3.8)
Length = 255
Score = 31.1 bits (67), Expect = 0.89
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 338 LSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRL-TLTPKTSQETPKIRHTPVHP 514
L +P+ P + S ++ SPL+ + S + T TPK+S +TP TP P
Sbjct: 16 LDAPLAKGPAPRWQRKASSGRSQTSPLRNSSRLNTSTKTPTKTPKSSNKTPLTAKTPKTP 75
Query: 515 K*D 523
D
Sbjct: 76 SED 78
>SB_24730| Best HMM Match : Kinesin (HMM E-Value=2.3e-17)
Length = 602
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Frame = +1
Query: 364 YFTSDRKIKVTRDQKLTSKNHDKLTKI--PEINSHSENFTRNTKNQTYASPPKVRSPLSY 537
Y + K K T+ Q S+ H T+I P H++ TYASP ++P Y
Sbjct: 455 YSKNKEKEKRTKKQSRPSEEHPASTQIVQPAPTGHAQKAYGYASMMTYASPQSYQTPAGY 514
>SB_41024| Best HMM Match : DIL (HMM E-Value=1.3e-30)
Length = 1440
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/77 (24%), Positives = 34/77 (44%)
Frame = +2
Query: 260 YPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSP 439
Y S + +SP + R + +N++ SSP++ + T SP SP + SP
Sbjct: 181 YDRSPNNSESPPINTARQIETYRNNVSSSPVSVRSTESEHSNKASPRFAISPSRDSPTSP 240
Query: 440 KSQRLTLTPKTSQETPK 490
+ + S+ TP+
Sbjct: 241 PLRPGSSGSDKSRSTPR 257
>SB_47342| Best HMM Match : VWA (HMM E-Value=0)
Length = 483
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +2
Query: 344 SPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPK 490
+PI PT + R SP T P+ T+ S + RL+ TP T ++T +
Sbjct: 233 APIQPSPTDSQVTRENSPSTTRRPITTIPTS-RPTRLS-TPSTRRKTTR 279
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = +2
Query: 290 PGPSKRRILSDIQ-NSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTP 466
P S R ++D+ N++ S P+ YK P+ KSP P+ ++ +PKS TP
Sbjct: 369 PIVSHRMRITDVAFNAVSSKPV-YKAFRPV----KSPGREQKPVISLMPTPKSVTTGTTP 423
Query: 467 KTSQE 481
T+ E
Sbjct: 424 ATTSE 428
>SB_22927| Best HMM Match : SerH (HMM E-Value=1.1)
Length = 678
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/68 (26%), Positives = 35/68 (51%)
Frame = +2
Query: 302 KRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQE 481
K ++ + +S+ +S T +I S E + SP+ ++T+S + T PK+S
Sbjct: 526 KAAYITSVTSSVQASHAK-SITQSIISVAASAELQGSPVTSVTHSGDLKYTTSPPKSSIV 584
Query: 482 TPKIRHTP 505
TP + ++P
Sbjct: 585 TPDLSNSP 592
>SB_37609| Best HMM Match : Extensin_2 (HMM E-Value=0.081)
Length = 1617
Score = 30.3 bits (65), Expect = 1.5
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Frame = +2
Query: 287 SPGPSKRRILS---DIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLT 457
SP S R++S D N I SP+ Y+ S L S +SPL P+SQ
Sbjct: 1071 SPQSSSFRVMSTCSDDSNIIPESPLKYQQ-SRLEHSFDSLVQHHSPL------PESQLRH 1123
Query: 458 LTPKTSQETPKIRHTPVHPK 517
PKTS+ K + PV P+
Sbjct: 1124 SWPKTSETPQKPENDPVIPR 1143
>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
Length = 353
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 302 KRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNS--PLKT--MTNSPKSQRLTLTPK 469
K R D N ++PIN T+ ++ S + +NS P+KT ++P + L
Sbjct: 133 KSRTSEDSSNRNCTTPINQSTTTVTVKNETSSDRKNSNQPIKTPCAESTPIALENRLVKT 192
Query: 470 TSQETPKIRHT 502
++ TP++ H+
Sbjct: 193 SAVTTPQVSHS 203
>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
Length = 398
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Frame = +2
Query: 302 KRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNS--PLKT--MTNSPKSQRLTLTPK 469
K R D N ++PIN T+ ++ S + +NS P+KT ++P + L
Sbjct: 178 KSRTSEDSSNRNCTTPINQSTTTVTVKNETSSDRKNSNQPIKTPCAESTPIALENRLVKT 237
Query: 470 TSQETPKIRHT 502
++ TP++ H+
Sbjct: 238 SAVTTPQVSHS 248
>SB_19342| Best HMM Match : Keratin_B2 (HMM E-Value=0.41)
Length = 1093
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = +2
Query: 380 ERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHTPVHPK 517
E+ K + +N T + PK ++ +TS+++P + P H K
Sbjct: 637 EKTKDHKKQNGRANTPSRVPKESKMPSNDQTSEQSPSSKTEPFHEK 682
>SB_25422| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/64 (25%), Positives = 29/64 (45%)
Frame = +2
Query: 326 QNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKIRHTP 505
+N + + P+ Y P L E E+ + ++ S + ++ K + PKI+H P
Sbjct: 132 ENHVPTPPLAYTPVRSLKEEQNLRESLQASVEESLESHEQEKKA---KKKNKQPKIKHEP 188
Query: 506 VHPK 517
PK
Sbjct: 189 ESPK 192
>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
Length = 1161
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +1
Query: 370 TSDRKIKVTRDQKLTSKNHDKLTKIPEINSHSENFTRNT 486
T+ ++K RDQK+ S N D + P I S +NT
Sbjct: 114 TAPERMKEERDQKIKSANRDNCLRKPHIYEFSRLTLQNT 152
>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
Length = 423
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +2
Query: 311 ILSDIQNSILSSPINYKPTSPL--IERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQET 484
+L+D+ S+L + ++ L I++L N +K + NS K QR+ K +E
Sbjct: 80 VLADVATSLLDGTV-FEIVKGLEDIQQLTERNLLNKRMKVI-NSHKVQRMEQAKKHKEEI 137
Query: 485 PKIRHTPVH 511
K +H P H
Sbjct: 138 EKNQHRPHH 146
>SB_54687| Best HMM Match : Trp_Tyr_perm (HMM E-Value=2.2)
Length = 369
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = +3
Query: 3 SQLSSYHLYWLIIEQFWIAMIMD**F*CFKLELKRCAKMWGESSENC 143
S++ H Y+L++E ++I D C +E+ CA+MWG NC
Sbjct: 178 SKVLQIHTYFLLLE----SVIHDVPMSCLAIEM--CAQMWGIGGINC 218
>SB_33602| Best HMM Match : Amelogenin (HMM E-Value=0.83)
Length = 242
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/72 (29%), Positives = 33/72 (45%)
Frame = +2
Query: 314 LSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETPKI 493
+S + + + I Y PT+P R +P SPL T SP S ++ + + T
Sbjct: 1 MSTVAHKVFWVYILYSPTAPRPHRPIAP----SPLGPTTPSPPSHHGPISLRPHRPTIPS 56
Query: 494 RHTPVHPK*DHR 529
H P+ P+ HR
Sbjct: 57 PHDPITPR-PHR 67
>SB_29436| Best HMM Match : PAN (HMM E-Value=0.021)
Length = 419
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 6/49 (12%)
Frame = +2
Query: 389 KSPETRNSP----LKTMTNSPKSQRLTLTPKT--SQETPKIRHTPVHPK 517
+SPET+++ ++ T SP++Q T TP+T + ETP+ + T P+
Sbjct: 99 ESPETQSTTETPETQSTTESPETQSTTQTPETQSTTETPETQSTTETPE 147
>SB_441| Best HMM Match : zf-C2H2 (HMM E-Value=5.5)
Length = 336
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/51 (25%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 290 PGPSKRRILSDIQNSILSSPINYKPT---SPLIERLKSPETRNSPLKTMTN 433
P S +R+ +++++ + P Y+ +P R+K+P+ N P K + N
Sbjct: 146 PRKSVKRMAQELEDNTIPPPPEYRDRPAPTPRARRIKTPQRVNKPDKALVN 196
>SB_39472| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 177
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +2
Query: 341 SSPINYKPTSPLIERLKSPETR--NSPLKTMTNSPKSQR 451
+ PIN + +P+ ++ +P+T+ N+P+ N+P +Q+
Sbjct: 6 NKPINQQANNPINQQANNPKTQQANNPMTQQANNPINQQ 44
>SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)
Length = 374
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = +2
Query: 284 QSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLT 463
QSP S + P+N P L + T+ + +K + P + T
Sbjct: 54 QSPSTSSHSVTQQGVTQHTMIPVNQMPLRTTSSGLSNVVTQINSVKIAQSVPVQVASSFT 113
Query: 464 PKTSQETP-KIRHTPVHPK*DHRYHMK 541
K +Q P K+ H+P H+ H +
Sbjct: 114 VKVTQSLPVKVTHSPTVSH-SHKEHFQ 139
>SB_58772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 104
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Frame = +2
Query: 338 LSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTP-KTSQETPKIR 496
+SSP P+SP + ++ ET + P+ T T + ++ ++T KT+Q K R
Sbjct: 4 ISSPEKQTPSSPTVHEYETRET-SEPIVTETETVETTPSSVTKVKTTQTVAKSR 56
>SB_43395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1112
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = +1
Query: 202 TTQQNVNRKKHSRTTTKRDVPPLA*LRPKSWPLEAQDPLRHTKLYTQLTN 351
TTQ+ N ++HS T K PP P PLE + L+ +LY N
Sbjct: 600 TTQRQGNMRRHSPTMDKHPFPPQM-QHPNLSPLEMR--LQQVQLYQNSPN 646
>SB_14560| Best HMM Match : Sushi (HMM E-Value=3.6e-35)
Length = 716
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = +1
Query: 484 TKNQTYASPPKVRSPLSYEIAENILDRPSPLTSRSLRGTLKIKEVLEDRSWYKRSNK 654
TKN+ +P K + P E+ + +++RP T +R + K + + + Y+ +NK
Sbjct: 391 TKNKILETPKKTKKPGCKEVVKKLIERPPSFTRIPVRKS-KSESRMYAKVKYECTNK 446
>SB_2821| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.3 bits (60), Expect = 6.2
Identities = 9/14 (64%), Positives = 12/14 (85%)
Frame = -2
Query: 690 HESFCHHWLTVLLV 649
HE FCHHWL+ ++V
Sbjct: 108 HEWFCHHWLSRVVV 121
>SB_42335| Best HMM Match : Hint (HMM E-Value=1.4013e-45)
Length = 825
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = +2
Query: 323 IQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPKTSQETP 487
+ +S P KPT+ + + P T +PL + + S + TP T + TP
Sbjct: 163 LPSSTPEMPETAKPTTVVTQVTTMPNTSVTPLTSPSTSVTQRTRPTTPVTQEATP 217
>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4865
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/39 (41%), Positives = 22/39 (56%)
Frame = +2
Query: 281 DQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSP 397
DQSP P + R+ S ++S SS +P SP+ R SP
Sbjct: 1922 DQSPRPGRSRVNSPSRDSRRSSG-GSRPPSPVKSRSSSP 1959
>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
Length = 428
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -2
Query: 285 WSKLSE-WGYISFCSCARMLLPVY-VLLRCYRNLS*SFLLLIRNTGNYFRNFHYSLPTFW 112
W +SE I F CA ++ Y VLLR Y+ + S L+ N YF YS+
Sbjct: 343 WQSVSERLDVIFFFICAITMIVTYSVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIM 402
Query: 111 HNVLILI 91
VL I
Sbjct: 403 KIVLCSI 409
>SB_56456| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1266
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = +2
Query: 395 PETRNSPLKTMTNSPKSQRLTLTPKTSQETPK 490
P +R +P +T TN+P+S+R S++TPK
Sbjct: 405 PSSRRNPRETKTNTPRSRR-----SNSRKTPK 431
>SB_54211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +2
Query: 341 SSPINYKPTSPLIERLKSPET-RNSPLKTMTNSPKS 445
SS N KP SP P T RNSP ++ NSP S
Sbjct: 494 SSDTNKKP-SPSQASFSQPSTLRNSPSSSLRNSPSS 528
>SB_51982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +2
Query: 290 PGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRNSPLKTMTNSPKSQRLTLTPK 469
P P+K+R SD+ + + +SP P+I R+ P T+ + T + + +S+ +
Sbjct: 127 PDPAKQRKSSDVSHRLSASP---NSRLPMIRRVSQPATKPT-TGTSSRTDRSRPAPSPAR 182
Query: 470 TSQET 484
+Q T
Sbjct: 183 VNQAT 187
>SB_25665| Best HMM Match : TolA (HMM E-Value=1.7)
Length = 697
Score = 27.9 bits (59), Expect = 8.3
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +2
Query: 230 SILAQLQKEMYPHSLSFDQSPGPSKRRILSDIQNSILSSPINYKPTSPLIERLKSPETRN 409
S L+ +++ P L+ P P + L +IQN + S N + L+ L S
Sbjct: 346 SPLSSPTQQVNPIPLNSPILPAPQQNNTLQNIQNLLTISSQNPEAMQMLLSGLGSQPQVA 405
Query: 410 SPLKTMTNSPKSQRLTLTPKTSQET 484
L + +S +L P Q T
Sbjct: 406 QTLLNLLRQAQSPGASLAPSMQQAT 430
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,676,538
Number of Sequences: 59808
Number of extensions: 422390
Number of successful extensions: 1673
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 1394
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1642
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -