Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0730
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    28   0.63 
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    28   0.83 
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    26   2.5  
SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor Whi5...    25   4.5  
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch...    25   4.5  
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe...    25   5.9  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   5.9  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    25   7.8  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    25   7.8  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    25   7.8  

>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 28.3 bits (60), Expect = 0.63
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +2

Query: 38  RSDAPVRGLLSYCGSLPPPDQSS 106
           ++   ++  LSYCG LP P+ S+
Sbjct: 142 KAGGKIKSFLSYCGGLPAPEDSN 164


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 27.9 bits (59), Expect = 0.83
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 467 ASWRKGDVHARRLSWVTPGFSQ 402
           + WR GD    R++W  P F Q
Sbjct: 54  SEWRAGDASLMRVAWAHPSFGQ 75


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 259 TFQPAHG*SAPYAHSHQNR 315
           T QPA+G S+PY + HQ +
Sbjct: 434 TPQPAYGSSSPYVNGHQTQ 452


>SPBC800.02 |whi5|mug54|cell cycle transcriptional repressor
           Whi5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 252

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +3

Query: 144 HAKTAVTRLVVGTGKHHIAKPRHAHKGGRIGTQRRTKLDISAS 272
           HA TA  +  +    +HI++P    +  R+GT   +++  S S
Sbjct: 178 HASTASAKSPLFGMNYHISRPEETDESLRLGTANLSRIRKSTS 220


>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 840

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 81  AFHHLTNLLLRALYIHALTE 140
           AF+++ N +L A+ IHA+T+
Sbjct: 466 AFYYIPNAILSAVIIHAVTD 485


>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = -3

Query: 228 CHLYGHGGAWRYGAYL 181
           CHL GH G   Y AYL
Sbjct: 295 CHLLGHEGEGSYLAYL 310


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +2

Query: 221 RWQDRHPAPHQARHFSQPTGDQRRTR 298
           R + R P+PH+AR  S P  D+R  R
Sbjct: 112 RLRSRSPSPHEARSRS-PYNDERSDR 136


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
 Frame = -2

Query: 289 ALITRGLAE--MSSLVRRWVPILPPLWA-WRGLAIWCLPVPTTSRVTAV 152
           A +  GL +  ++SL+R W P+ P L A      +W  P+ T   ++A+
Sbjct: 125 AKMANGLCDNLLTSLIRAWAPLKPILLAPAMNTLMWTNPI-TQEHLSAI 172


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 319 GIGFGANARTALITRGLAEM 260
           G+ +G N + A++ RGL EM
Sbjct: 244 GLEWGGNTKAAIMRRGLLEM 263


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +2

Query: 53  VRGLLSYCGSLPPPDQSSPARFVHPCPDRASCQNGG 160
           +R    YCGS     + S +    PCP   S   GG
Sbjct: 74  IRNNQCYCGSTLTATEVSSSLCTTPCPGYGSLMCGG 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,572
Number of Sequences: 5004
Number of extensions: 45856
Number of successful extensions: 126
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)