Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0730
(473 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0200 - 12946139-12946282,12947636-12947842,12949506-129496... 31 0.36
08_02_0186 + 13965960-13966424 31 0.47
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615... 30 1.1
01_06_0409 + 29142409-29142870 30 1.1
01_05_0485 - 22628999-22629325,22630340-22630450,22630888-226310... 30 1.1
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 29 1.4
05_03_0258 - 11153709-11156090 29 1.9
12_02_0749 - 22758317-22760407 29 2.5
11_04_0150 + 14127378-14127612,14127705-14128144 28 3.3
06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047 28 3.3
09_06_0010 - 20193577-20193921,20194014-20194160,20194239-201944... 28 4.4
04_04_1584 + 34601927-34602144,34603324-34603510,34604239-346044... 28 4.4
10_08_0304 - 16640937-16642877 27 5.8
04_03_0802 - 19830614-19831275,19831426-19831507 27 5.8
02_05_0997 + 33382756-33382861,33383070-33383161,33383936-333841... 27 5.8
01_05_0693 - 24339917-24340524,24340778-24341252 27 5.8
01_03_0011 + 11630506-11630853 27 5.8
06_03_0451 - 20925100-20926734 27 7.7
02_01_0332 + 2367921-2368406 27 7.7
>06_02_0200 -
12946139-12946282,12947636-12947842,12949506-12949629,
12950167-12950369,12950922-12951620,12951723-12951784,
12952395-12952404,12954905-12957631
Length = 1391
Score = 31.5 bits (68), Expect = 0.36
Identities = 19/43 (44%), Positives = 22/43 (51%)
Frame = -2
Query: 349 ANWVPGPPSHGIGFGANARTALITRGLAEMSSLVRRWVPILPP 221
A W P PPSH I A AL T G A+ + W P+LPP
Sbjct: 8 ALWSPSPPSHHITAAAATPAALFT-GAAD--GTILHW-PLLPP 46
>08_02_0186 + 13965960-13966424
Length = 154
Score = 31.1 bits (67), Expect = 0.47
Identities = 19/46 (41%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Frame = +2
Query: 80 SLPPPDQ-SSPARFVHPCPDRA-SCQNGGYATGCRYR*APYRQAPP 211
S PPP Q + P+ PCP A C GG G PY APP
Sbjct: 69 SPPPPSQPAGPSSHTPPCPPAAVVCCGGGGGGGQYTPQQPYYYAPP 114
>08_02_1143 +
24659105-24659386,24660171-24660272,24661259-24661521,
24661775-24661874,24662080-24662238,24662327-24663147,
24663299-24663618,24665831-24667398
Length = 1204
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +2
Query: 86 PPPDQSSPARFVHPCPDRASCQNGGYATG 172
PPP P R P P+R S + G Y +G
Sbjct: 722 PPPPPPPPRRRAEPTPERPSSRRGRYHSG 750
>01_06_0409 + 29142409-29142870
Length = 153
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Frame = -3
Query: 270 WLKCRAWCG--AGCRSCHLYGHGGAWRYGAYLYRQPVA*PPFWHDARSGHGCTKRAGEDW 97
WL C A C+L G GG WR G + A GC R G+D
Sbjct: 78 WLPCHLATAVEAMASGCYLLGGGGRWRNGGF------AEAVVGVGGSGDGGCDSRGGDDV 131
Query: 96 SGG 88
GG
Sbjct: 132 GGG 134
>01_05_0485 -
22628999-22629325,22630340-22630450,22630888-22631034,
22631283-22631337,22631761-22632134,22632926-22633000,
22633419-22633670
Length = 446
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = -1
Query: 308 WCECAYGADHPWAG*NVELGAALGADPATFMGMAGLGDMVLTCTD 174
WC C G WAG N+ P + + + +G L+C D
Sbjct: 50 WCRCRIGLQRAWAGCNLR-----NTGPKSLLQLINMGRNQLSCID 89
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +2
Query: 239 PAPHQARHFSQP-TGDQRRTRIRTKTDTVGGGARYPIRPIVSRITIHWPS 385
PA A H P D+R+ R R G GA + P SR +IHW S
Sbjct: 186 PACFAAGHHVVPGVADRRKCRPRGILAIAGEGASEELDPDPSRASIHWLS 235
>05_03_0258 - 11153709-11156090
Length = 793
Score = 29.1 bits (62), Expect = 1.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 38 RSDAPVRGLLSYCGSLPPPDQSSPARFVHPCP 133
RS P+ LL + + PPP Q R HP P
Sbjct: 40 RSSLPLDSLLLHLTAAPPPPQPPATRRPHPTP 71
>12_02_0749 - 22758317-22760407
Length = 696
Score = 28.7 bits (61), Expect = 2.5
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +2
Query: 17 RLLAFQRRSDAPVRGLLSYCGSLPPPDQSSPAR 115
RL RR + P R LS + PPD + PAR
Sbjct: 19 RLSGANRRPETPPRSSLSTKSAANPPDPADPAR 51
>11_04_0150 + 14127378-14127612,14127705-14128144
Length = 224
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Frame = +2
Query: 203 APPCP*RWQDRH----PA--PHQARHFSQPTGDQRRTR 298
AP C RW R PA PHQ +H+++ GD R R
Sbjct: 177 APSCASRWAARQMSLPPARVPHQQQHYNRHGGDARPQR 214
>06_03_0938 - 26126669-26127115,26127197-26127619,26127727-26128047
Length = 396
Score = 28.3 bits (60), Expect = 3.3
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +2
Query: 83 LPPPDQSSPAR---FVHPCPDRASCQNGGYATGCRYR*APYRQAPPCP 217
LPPP QS P+R +++ P R ++G + + C +R +P + P P
Sbjct: 5 LPPPSQSVPSRPPSWLYIPPRR---RHGTFTSSCAFRLSPSSPSSPPP 49
>09_06_0010 -
20193577-20193921,20194014-20194160,20194239-20194495,
20194619-20194826
Length = 318
Score = 27.9 bits (59), Expect = 4.4
Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Frame = +3
Query: 120 YIHALTEHHAKTAVTRLVVGTGKHHIAKPRHAHKGGRIGTQRRTKLDISASPRVISAVRA 299
Y+ +L AK A + H AKPR H + +R+ + A+P A
Sbjct: 211 YVESLDAIRAKNAASHNKASGNGH--AKPRAPHLPPPVSQRRQFQAPPPAAPTTTKTAAA 268
Query: 300 FAPKP-IPWE 326
AP P WE
Sbjct: 269 PAPPPTASWE 278
>04_04_1584 +
34601927-34602144,34603324-34603510,34604239-34604496,
34604866-34604965,34608523-34608639,34608704-34608804,
34609035-34610141
Length = 695
Score = 27.9 bits (59), Expect = 4.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 26 AFQRRSDAPVRGLLSYCGSLPPP 94
AF R+ +P R L S C SLPPP
Sbjct: 474 AFVYRTPSPRRHLSSTCQSLPPP 496
>10_08_0304 - 16640937-16642877
Length = 646
Score = 27.5 bits (58), Expect = 5.8
Identities = 20/66 (30%), Positives = 30/66 (45%)
Frame = +3
Query: 69 RIAVAFHHLTNLLLRALYIHALTEHHAKTAVTRLVVGTGKHHIAKPRHAHKGGRIGTQRR 248
R VA L RA + L+ H + A +R + G +A RHAH GG ++
Sbjct: 546 RARVADRRQYELSGRAYVLAGLSSHAQQRATSRQMSG----EVAPRRHAHGGGGGSSELP 601
Query: 249 TKLDIS 266
T + +S
Sbjct: 602 TGITVS 607
>04_03_0802 - 19830614-19831275,19831426-19831507
Length = 247
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 56 RGLLSYCGSLPPPDQSSPARFVHPCPDRASCQNGGYATGCRYR*APYRQAPP 211
RGL +CG PP + P F +P P C+ + R P R+A P
Sbjct: 116 RGLQQHCGGKPPGCKMVP--FPYPVPYPVPCKCCPHRRRRHARSGPARRAVP 165
>02_05_0997 +
33382756-33382861,33383070-33383161,33383936-33384175,
33384820-33384900,33384974-33385113,33385462-33385622,
33385700-33385800,33385895-33385969,33386218-33386488,
33386657-33386697,33386922-33387004,33387100-33387189,
33387721-33387825,33388023-33388161,33388467-33388670,
33388837-33388908,33389189-33389273,33389374-33389480
Length = 730
Score = 27.5 bits (58), Expect = 5.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +2
Query: 344 IRPIVSRITIHWPSFYNVVTGKTLALPNLIALH 442
+R +S + W S N+ K ALP+LIA H
Sbjct: 241 VRSSLSMMAKQWSSAMNLFNEKFSALPSLIAAH 273
>01_05_0693 - 24339917-24340524,24340778-24341252
Length = 360
Score = 27.5 bits (58), Expect = 5.8
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 361 THYRANWVPGPPSHGIGFGANARTA 287
TH +W P PPSH G A TA
Sbjct: 104 THLGYSWAPPPPSHRHGHRAENGTA 128
>01_03_0011 + 11630506-11630853
Length = 115
Score = 27.5 bits (58), Expect = 5.8
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = -3
Query: 249 CGAGCRSCHLYGHGGAWRYG 190
CG C S H HG WR G
Sbjct: 7 CGRRCTSKHWNHHGSVWRLG 26
>06_03_0451 - 20925100-20926734
Length = 544
Score = 27.1 bits (57), Expect = 7.7
Identities = 11/33 (33%), Positives = 17/33 (51%)
Frame = +2
Query: 344 IRPIVSRITIHWPSFYNVVTGKTLALPNLIALH 442
+ P++ + + W SF V ALP L +LH
Sbjct: 146 LSPVMEHLNLSWNSFSGAVPPGVAALPALKSLH 178
>02_01_0332 + 2367921-2368406
Length = 161
Score = 27.1 bits (57), Expect = 7.7
Identities = 13/36 (36%), Positives = 14/36 (38%)
Frame = +2
Query: 110 ARFVHPCPDRASCQNGGYATGCRYR*APYRQAPPCP 217
+R HPCP AS GG Y P CP
Sbjct: 2 SRVFHPCPSPASAATGGAHDVMEYGSLPRHTMSFCP 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,086,145
Number of Sequences: 37544
Number of extensions: 453979
Number of successful extensions: 1621
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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