Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0730
(473 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 31 0.42
U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical p... 27 5.2
Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical pr... 27 5.2
Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical p... 27 6.9
Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 27 6.9
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 27 6.9
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 27 6.9
AL033514-6|CAA22096.2| 373|Caenorhabditis elegans Hypothetical ... 27 6.9
AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical... 27 6.9
AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear recep... 27 6.9
AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear recep... 27 6.9
AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear recep... 27 6.9
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 27 6.9
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 31.1 bits (67), Expect = 0.42
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Frame = +2
Query: 23 LAFQRRSDAPVRGLLSYCGSLPPPDQS--SPARFVHPCPDRASCQNGGYATGCRYR*AP- 193
+A + +S +P R PPP + SP++ P P RA ++ R R +P
Sbjct: 293 VAARAKSGSPRRRRSPSASKSPPPARRRRSPSQSKSPAPKRAKSRSKSPPAPARRRRSPS 352
Query: 194 -YRQAPPCP*RWQDRHPAPHQARHFS 268
+ PP P R + R +P R S
Sbjct: 353 ASKSPPPAPKRAKSRSKSPPARRRRS 378
>U40420-1|AAA81430.1| 2214|Caenorhabditis elegans Hypothetical
protein F40F4.6 protein.
Length = 2214
Score = 28.3 bits (60), Expect = 3.0
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 56 RGLLSYCGSLPPPDQSSPARFVHPCPDRASCQNGG 160
R ++ Y LPP ++PA P SCQNGG
Sbjct: 314 RRIVPYQCVLPPVTTTTPAVPTTPAAPITSCQNGG 348
>Z98866-26|CAM33505.1| 559|Caenorhabditis elegans Hypothetical
protein Y49E10.29 protein.
Length = 559
Score = 27.5 bits (58), Expect = 5.2
Identities = 20/68 (29%), Positives = 27/68 (39%)
Frame = +2
Query: 86 PPPDQSSPARFVHPCPDRASCQNGGYATGCRYR*APYRQAPPCP*RWQDRHPAPHQARHF 265
P P Q+ P R P P + AT + AP +QAPP P+P
Sbjct: 369 PTPQQAPPVRQNPPMPAVQQAPSSQQATQAPPKPAP-QQAPPVQQNPPKPTPSPAPPAQK 427
Query: 266 SQPTGDQR 289
+QP Q+
Sbjct: 428 AQPVTQQQ 435
>Z70757-4|CAA94800.1| 1208|Caenorhabditis elegans Hypothetical protein
ZK287.4 protein.
Length = 1208
Score = 27.5 bits (58), Expect = 5.2
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -2
Query: 403 SHDVVKRRPVN--C-NTTHYRANWVPGPPSHGIGFGANARTALITRGLAEMSSLVRRWVP 233
SHD ++ P N C T+H +P PP + A A +++ + S++V +VP
Sbjct: 850 SHDCIQSTPHNLCCPKTSHLVPESIPAPPFEPVQMPIPAPPAQVSQPQEQSSNMVIDFVP 909
>Z98877-17|CAB11571.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 27 HFNAEAMRQFADFFRIAVAFHHL 95
HF AEA R A FFR +VA + L
Sbjct: 22 HFGAEACRACAAFFRRSVALNKL 44
>Z83125-4|CAB05616.1| 376|Caenorhabditis elegans Hypothetical
protein T15D6.5 protein.
Length = 376
Score = 27.1 bits (57), Expect = 6.9
Identities = 9/24 (37%), Positives = 16/24 (66%)
Frame = +3
Query: 24 WHFNAEAMRQFADFFRIAVAFHHL 95
WH + + RQF DF++ ++A + L
Sbjct: 349 WHMSKRSDRQFLDFYQQSLALYQL 372
>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical
protein F53B6.2a protein.
Length = 1045
Score = 27.1 bits (57), Expect = 6.9
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 270 WLKCRAWCGAGCRSCHLYGHGGA 202
W KC A CG G R H+ GG+
Sbjct: 303 WSKCTASCGQGVRRRHVACVGGS 325
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 86 PPPDQSSPARFVHPC--PDRASCQNGG--YATGCR 178
PPP S P R HPC P+R C G ATG +
Sbjct: 1921 PPPPPSPPPR--HPCQDPERNDCHPAGTCRATGAQ 1953
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 86 PPPDQSSPARFVHPC--PDRASCQNGG--YATGCR 178
PPP S P R HPC P+R C G ATG +
Sbjct: 2505 PPPPPSPPPR--HPCQDPERNDCHPAGTCRATGAQ 2537
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 86 PPPDQSSPARFVHPC--PDRASCQNGG--YATGCR 178
PPP S P R HPC P+R C G ATG +
Sbjct: 1921 PPPPPSPPPR--HPCQDPERNDCHPAGTCRATGAQ 1953
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 86 PPPDQSSPARFVHPC--PDRASCQNGG--YATGCR 178
PPP S P R HPC P+R C G ATG +
Sbjct: 2505 PPPPPSPPPR--HPCQDPERNDCHPAGTCRATGAQ 2537
>AL033514-6|CAA22096.2| 373|Caenorhabditis elegans Hypothetical
protein Y75B8A.6 protein.
Length = 373
Score = 27.1 bits (57), Expect = 6.9
Identities = 12/33 (36%), Positives = 14/33 (42%)
Frame = +2
Query: 188 APYRQAPPCP*RWQDRHPAPHQARHFSQPTGDQ 286
AP PP P Q HP PH F+ + Q
Sbjct: 8 APMNGGPPPPQMLQMHHPLPHHVAVFAHGSSSQ 40
>AL021497-21|CAA16413.1| 389|Caenorhabditis elegans Hypothetical
protein Y51A2D.17 protein.
Length = 389
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 27 HFNAEAMRQFADFFRIAVAFHHL 95
HF AEA R A FFR +VA + L
Sbjct: 22 HFGAEACRACAAFFRRSVALNKL 44
>AF273823-1|AAG15172.1| 388|Caenorhabditis elegans nuclear
receptor NHR-70 protein.
Length = 388
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 27 HFNAEAMRQFADFFRIAVAFHHL 95
HF AEA R A FFR +VA + L
Sbjct: 21 HFGAEACRACAAFFRRSVALNKL 43
>AF273822-1|AAG15171.1| 387|Caenorhabditis elegans nuclear
receptor NHR-70 protein.
Length = 387
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 27 HFNAEAMRQFADFFRIAVAFHHL 95
HF AEA R A FFR +VA + L
Sbjct: 20 HFGAEACRACAAFFRRSVALNKL 42
>AF273821-1|AAG15170.1| 383|Caenorhabditis elegans nuclear
receptor NHR-70 protein.
Length = 383
Score = 27.1 bits (57), Expect = 6.9
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +3
Query: 27 HFNAEAMRQFADFFRIAVAFHHL 95
HF AEA R A FFR +VA + L
Sbjct: 16 HFGAEACRACAAFFRRSVALNKL 38
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 27.1 bits (57), Expect = 6.9
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = +2
Query: 86 PPPDQSSPARFVHPC--PDRASCQNGG--YATGCR 178
PPP S P R HPC P+R C G ATG +
Sbjct: 2505 PPPPPSPPPR--HPCQDPERNDCHPAGTCRATGAQ 2537
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,637,234
Number of Sequences: 27780
Number of extensions: 295027
Number of successful extensions: 1052
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 963
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1045
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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