Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0730
(473 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate dehy... 64 3e-11
At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD... 31 0.40
At1g74870.1 68414.m08677 expressed protein contains similarity t... 28 2.8
At1g02120.1 68414.m00138 GRAM domain-containing protein-related ... 27 4.9
At4g21910.3 68417.m03169 MATE efflux family protein similar to r... 27 6.5
At4g21910.1 68417.m03168 MATE efflux family protein similar to r... 27 6.5
At1g50050.1 68414.m05616 pathogenesis-related protein, putative ... 27 6.5
At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family... 27 8.6
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 27 8.6
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 27 8.6
At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (... 27 8.6
At2g29510.1 68415.m03584 expressed protein 27 8.6
At1g77600.1 68414.m09035 expressed protein weak similarity to Pd... 27 8.6
At1g76240.1 68414.m08853 expressed protein contains Pfam profile... 27 8.6
At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein ... 27 8.6
>At2g40690.1 68415.m05020 NAD-dependent glycerol-3-phosphate
dehydrogenase family protein low similarity to SP|Q26756
Glycerol-3-phosphate dehydrogenase [NAD+], glycosomal
(EC 1.1.1.8) {Trypanosoma brucei rhodesiense}; contains
Pfam profile PF01210: NAD-dependent glycerol-3-phosphate
dehydrogenase
Length = 420
Score = 64.5 bits (150), Expect = 3e-11
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = -1
Query: 254 LGAALGADPATFMGMAGLGDMVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYR 75
L +GA P T G++G GD++LTC N SRNR G+ LG G + + QV EG
Sbjct: 313 LATKMGAKPTTITGLSGTGDIMLTCFVNLSRNRTVGVRLGSGETLDDILTSMNQVAEGVA 372
Query: 74 NTKEVRELAHRFGVEMPI 21
V LA ++ V++P+
Sbjct: 373 TAGAVIALAQKYNVKLPV 390
>At5g40610.1 68418.m04930 glycerol-3-phosphate dehydrogenase [NAD+]
/ GPDH strong similarity to SP|P52425
Glycerol-3-phosphate dehydrogenase [NAD+] (EC 1.1.1.8)
{Cuphea lanceolata}; contains Pfam profile PF01210:
NAD-dependent glycerol-3-phosphate dehydrogenase
Length = 400
Score = 31.1 bits (67), Expect = 0.40
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
Frame = -1
Query: 227 ATFMGMAGLGDMVLTCTDNQSRN--RRFGMMLG-QGMDVQSAQEKIGQVVEGYRNTKEVR 57
+TF G+ D++ TC ++R F G + D A+ GQ ++G +EV
Sbjct: 302 STFFESCGVADVITTCLGGRNRRVAEAFAKSRGKRSFDELEAEMLQGQKLQGVSTAREVY 361
Query: 56 E-LAHRFGVEM-PITEEIYQ 3
E L H +EM P+ ++Q
Sbjct: 362 EVLKHCGWLEMFPLFSTVHQ 381
>At1g74870.1 68414.m08677 expressed protein contains similarity to
hypothetical proteins
Length = 289
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 142 CSVRAWMYKARRRRLVRWWKATAIRKKSANWRIASALK 29
C ++ W ARR++ + WK + ++ R+ S L+
Sbjct: 29 CKLKQWKIDARRKQWISQWKKANVDEEEIGRRLRSLLE 66
>At1g02120.1 68414.m00138 GRAM domain-containing protein-related
contains low similarity to PF02893: GRAM domain
Length = 556
Score = 27.5 bits (58), Expect = 4.9
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 213 AHKGGRIGTQRRT-KLDISASPRVISAVRAFAPKPIPWEGGPGT 341
A G + R T K+D SASP V+S + +PK P P T
Sbjct: 53 ASVSGSVDLPRGTMKVDSSASPEVVSDLPPSSPKGSPDRHDPST 96
>At4g21910.3 68417.m03169 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 507
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -1
Query: 254 LGAALGADPATFMGMAGLGDMVLTCTDNQSRNRRFGMMLGQGMDVQS 114
+ + +G F G G ++ N N +G+MLG G V++
Sbjct: 72 VNSGMGISARVFAGHVGSQELAAASIGNSCFNLVYGLMLGMGSAVET 118
>At4g21910.1 68417.m03168 MATE efflux family protein similar to
ripening regulated protein DDTFR18 [Lycopersicon
esculentum] GI:12231296; contains Pfam profile PF01554:
Uncharacterized membrane protein family
Length = 507
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/47 (25%), Positives = 21/47 (44%)
Frame = -1
Query: 254 LGAALGADPATFMGMAGLGDMVLTCTDNQSRNRRFGMMLGQGMDVQS 114
+ + +G F G G ++ N N +G+MLG G V++
Sbjct: 72 VNSGMGISARVFAGHVGSQELAAASIGNSCFNLVYGLMLGMGSAVET 118
>At1g50050.1 68414.m05616 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1b precursor
(pr-1b) GB:X03465 GI:19977 from [Nicotiana tabacum];
contains Pfam profile PF00188: SCP-like extracellular
protein
Length = 226
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +2
Query: 137 RASCQNGGYATGCRY 181
R C NGGY GC Y
Sbjct: 136 RVLCNNGGYFVGCNY 150
>At5g55750.1 68418.m06949 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 175
Score = 26.6 bits (56), Expect = 8.6
Identities = 19/47 (40%), Positives = 19/47 (40%), Gaps = 3/47 (6%)
Frame = +2
Query: 86 PPPDQSSPARF-VHPCPDRASC-QNGGYATGCRYR*A-PYRQAPPCP 217
PPP QSSP R P P C Q G Y PY PP P
Sbjct: 76 PPPSQSSPPRSRCPPVPTTGCCNQPPGPPPSTMYSPPYPYFYTPPYP 122
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 197 RQAPPCP*RWQDRHPAPHQARHFSQ--PTGDQRRTRIRTKT 313
R PP R + R P P++ R S+ P ++RR R R+++
Sbjct: 273 RSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRS 313
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +2
Query: 197 RQAPPCP*RWQDRHPAPHQARHFSQ--PTGDQRRTRIRTKT 313
R PP R + R P P++ R S+ P ++RR R R+++
Sbjct: 273 RSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRS 313
>At2g47430.1 68415.m05920 cytokinin-responsive histidine kinase (CKI1)
identical to GB:D87545
Length = 1122
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -1
Query: 89 VEGYRNTKEVRELAHRFGVEMPI 21
++GY T+E+R++ +GV PI
Sbjct: 1056 MDGYEATREIRKVEKSYGVRTPI 1078
>At2g29510.1 68415.m03584 expressed protein
Length = 839
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/31 (32%), Positives = 14/31 (45%)
Frame = +2
Query: 92 PDQSSPARFVHPCPDRASCQNGGYATGCRYR 184
P + P+ + SC GG+ TGC R
Sbjct: 678 PHKGGPSSLIQRWKSDGSCDCGGWDTGCNLR 708
>At1g77600.1 68414.m09035 expressed protein weak similarity to Pds5
(GI:16751524) [Schizosaccharomyces pombe]; weak
similarity to androgen-induced prostate proliferative
shutoff associated protein (GI:4559410) [Homo sapiens]
Length = 1285
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = -1
Query: 200 GDMVLTCTDNQSRNRRFGMMLGQGMDVQSAQEKIGQVVEGYRNTKEVRELAH 45
GD+ L C D++S +GQ QE++G+ E Y + V E++H
Sbjct: 1176 GDVELVCLDSESWETLSHESMGQ-------QERLGKETESYGSRNCVPEISH 1220
>At1g76240.1 68414.m08853 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 308
Score = 26.6 bits (56), Expect = 8.6
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -1
Query: 452 GDVHARRLSWVTPGFSQSRRCKTTASEL 369
G+ H+R SW+T G S + + T +++
Sbjct: 62 GETHSRTTSWITDGLSLLKDVQETLADI 89
>At1g67030.1 68414.m07622 zinc finger (C2H2 type) family protein
(ZFP6) identical to zinc finger protein, ZFP6
gi|790683|gb|AAA87302; contains Pfam domain, PF00096:
Zinc finger, C2H2 type
Length = 197
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = -3
Query: 201 WRYGAYLYRQPVA*PPFWHDARS--GHGCTKRAGEDWSGGGRLPQYER 64
W YG ++ Q ++H R G G AGE + GG LP+ R
Sbjct: 125 WLYGEHMSSQNAV--GYFHGGRGLYGGGMESMAGEVKTHGGSLPEMRR 170
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,256,764
Number of Sequences: 28952
Number of extensions: 289589
Number of successful extensions: 773
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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