Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0728
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P11420 Cluster: Protein daughterless; n=2; Drosophila m...    51   3e-05
UniRef50_Q29CW9 Cluster: GA18660-PA; n=1; Drosophila pseudoobscu...    50   6e-05
UniRef50_Q1HTM7 Cluster: Daughterless; n=1; Glomeris marginata|R...    45   0.001
UniRef50_UPI0000D568B1 Cluster: PREDICTED: similar to Protein da...    40   0.038
UniRef50_Q8IB83 Cluster: Putative uncharacterized protein PF08_0...    38   0.26 
UniRef50_Q2K718 Cluster: Putative uncharacterized protein; n=1; ...    34   3.3  

>UniRef50_P11420 Cluster: Protein daughterless; n=2; Drosophila
          melanogaster|Rep: Protein daughterless - Drosophila
          melanogaster (Fruit fly)
          Length = 710

 Score = 50.8 bits (116), Expect = 3e-05
 Identities = 23/30 (76%), Positives = 23/30 (76%)
 Frame = +2

Query: 2  EPMHLYEVFQNCFNKIANKQQGELENAYRG 91
          EPMHLYEVFQNCFNKIANKQ      A RG
Sbjct: 7  EPMHLYEVFQNCFNKIANKQPTGTVGADRG 36


>UniRef50_Q29CW9 Cluster: GA18660-PA; n=1; Drosophila
          pseudoobscura|Rep: GA18660-PA - Drosophila
          pseudoobscura (Fruit fly)
          Length = 779

 Score = 49.6 bits (113), Expect = 6e-05
 Identities = 22/30 (73%), Positives = 22/30 (73%)
 Frame = +2

Query: 2  EPMHLYEVFQNCFNKIANKQQGELENAYRG 91
          EPMHLYEVFQNCFNKIANKQ        RG
Sbjct: 7  EPMHLYEVFQNCFNKIANKQPTGTAGTDRG 36


>UniRef50_Q1HTM7 Cluster: Daughterless; n=1; Glomeris
          marginata|Rep: Daughterless - Glomeris marginata
          Length = 570

 Score = 45.2 bits (102), Expect = 0.001
 Identities = 17/20 (85%), Positives = 19/20 (95%)
 Frame = +2

Query: 2  EPMHLYEVFQNCFNKIANKQ 61
          EP+HLYEVFQNCFNKI N+Q
Sbjct: 5  EPLHLYEVFQNCFNKITNRQ 24


>UniRef50_UPI0000D568B1 Cluster: PREDICTED: similar to Protein
          daughterless; n=1; Tribolium castaneum|Rep: PREDICTED:
          similar to Protein daughterless - Tribolium castaneum
          Length = 532

 Score = 40.3 bits (90), Expect = 0.038
 Identities = 18/20 (90%), Positives = 18/20 (90%), Gaps = 1/20 (5%)
 Frame = +2

Query: 2  EPMH-LYEVFQNCFNKIANK 58
          EPMH LYEVF NCFNKIANK
Sbjct: 7  EPMHHLYEVFTNCFNKIANK 26


>UniRef50_Q8IB83 Cluster: Putative uncharacterized protein
           PF08_0027; n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PF08_0027 - Plasmodium
           falciparum (isolate 3D7)
          Length = 978

 Score = 37.5 bits (83), Expect = 0.26
 Identities = 19/69 (27%), Positives = 36/69 (52%)
 Frame = -1

Query: 516 ILVTLFCDVIQRIFLYIYYLITSLQRERRRQSK*IHFNNSVSH*IHESTMV*AHLVQRDQ 337
           I  TL+  ++Q + L++ YL      E  ++   +H+   + H  HE+  V  H++ ++ 
Sbjct: 584 IYCTLYIHLVQNLSLFLKYL-KYYNNEEIKEKILVHYEYFIFHVFHETNNVNFHIIFKNN 642

Query: 336 NIAFIRLFL 310
           N AF+ L L
Sbjct: 643 NAAFVTLKL 651


>UniRef50_Q2K718 Cluster: Putative uncharacterized protein; n=1;
           Rhizobium etli CFN 42|Rep: Putative uncharacterized
           protein - Rhizobium etli (strain CFN 42 / ATCC 51251)
          Length = 123

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = -1

Query: 552 LPIDKKYAPKNLILVTLFCDVIQRIFLYIYYLITSLQRER 433
           L I + YA K  IL  L C V+  I L ++Y I  +Q ER
Sbjct: 23  LSISEGYALKYFILYALVCSVVGIILLVVFYQIAPVQMER 62


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 596,762,516
Number of Sequences: 1657284
Number of extensions: 11386645
Number of successful extensions: 24140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24136
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)