Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0728
         (633 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0459 + 17420156-17420976,17422291-17424199                       27   9.4  
03_05_1111 - 30479793-30479823,30479887-30479978,30480261-304804...    27   9.4  

>08_02_0459 + 17420156-17420976,17422291-17424199
          Length = 909

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = +2

Query: 14  LYEVFQNCFNKIANKQQGELENAYRGSTRVPRTDSVVQVKCSIVKNVKSVCVLCHSCV 187
           LYE  + CFN++ N+   +LE       RV   D+V+    S+ K    V ++   C+
Sbjct: 464 LYESGEMCFNELVNRNLLQLEKQNYNGCRV--HDTVLDFIISMSKKNNFVTLVTSPCL 519


>03_05_1111 -
           30479793-30479823,30479887-30479978,30480261-30480410,
           30482229-30482354,30482563-30482628,30483134-30483214,
           30483310-30483422,30483553-30483721,30484253-30484330,
           30485489-30485752,30486239-30486379,30486548-30486759,
           30486819-30486940,30487281-30487398,30487925-30487997
          Length = 611

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +2

Query: 41  NKIANKQQGELENAYRGSTRVPRTDSVVQVKCSIVKNVKSV 163
           N I  +++ E+E A   S  V   D   + +C+++  ++ V
Sbjct: 137 NLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMV 177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,411,265
Number of Sequences: 37544
Number of extensions: 289594
Number of successful extensions: 557
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 550
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 557
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)