Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0728
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6649| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    28   5.5  
SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)               28   7.2  
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)                      27   9.6  

>SB_6649| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 72

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/35 (37%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 272 YTFKNNTTPLSRRWVHYLRVIIKNAAS-LQHKNGI 171
           Y F+ +T+  +RRW+ YLR+  K+  S  + +NG+
Sbjct: 30  YIFRASTSRENRRWLKYLRIQAKDLGSWRRRRNGL 64


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -2

Query: 287  LNNLWYTFKNNTTPLSRRWVHYLRVIIKNAASLQHKN 177
            +N+L+Y +  N   LS R   YLR  + N   L++ N
Sbjct: 2326 VNSLYYCYGTNKATLSSRLCIYLRANVSNRVLLRYIN 2362


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 2   EPMHLYEVFQNCFNKIANKQQGELENAYRGSTRVPRTDSVVQVKCSIVKNVKSVCVLCHS 181
           E MH+Y  + + +   A+  +    + YR   RVP   + V   C+ V N+ +     H 
Sbjct: 794 EHMHVYRTYAHLYRTYAHVYR-TYAHVYRTYARVPNICTCVPNICTCVPNICTCTEHMHI 852

Query: 182 C 184
           C
Sbjct: 853 C 853


>SB_56032| Best HMM Match : zf-CCHC (HMM E-Value=0.00047)
          Length = 632

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +2

Query: 50  ANKQQGELENAYRGSTRVPRTDSV 121
           AN+   E +NAYRG +R+ + D++
Sbjct: 371 ANENNAETQNAYRGPSRIRQRDTL 394


>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
          Length = 244

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 188 QHKNGITRKHF*RFSQWN-TSLEQHCPFEERESSHGMHFLTH 66
           + ++G  R+H   + + + T  + H  +EE   +H  H +TH
Sbjct: 198 EEEHGTHRQHHVTYEEKHGTHRQHHVTYEEEHGTHRQHHVTH 239


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,338,345
Number of Sequences: 59808
Number of extensions: 399453
Number of successful extensions: 813
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)